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Dockerfile 6.24 KiB
FROM ubuntu:20.04 as builder
ARG portable=True
RUN export DEBIAN_FRONTEND=noninteractive && \
apt-get update && \
apt-get install -y \
bison \
build-essential \
casacore-data \
casacore-dev \
cmake \
flex \
gfortran \
git \
libblas-dev \
libcfitsio-dev \
libfftw3-dev \
libgsl-dev \
liblapack-dev \
liblua5.3-dev \
libhdf5-serial-dev \
libboost-filesystem-dev \
libboost-system-dev \
libboost-date-time-dev \
libboost-program-options-dev \
libboost-test-dev \
libgtkmm-3.0-dev \
libncurses5-dev \
libpng-dev \
libpython3-dev \
pkg-config \
python3-numpy \
wcslib-dev \
wget && \
mkdir -p /src/
WORKDIR /src/
RUN \
git clone https://github.com/lofar-astron/LofarStMan --depth 1 && \
mkdir LofarStMan/build && \
cd LofarStMan/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=${portable} && \
make install -j`nproc`
RUN \
git clone https://github.com/aroffringa/dysco.git --depth 1 && \
mkdir dysco/build && \
cd dysco/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=${portable} && \
make install -j`nproc`
# IDG doesn't work with --depth 1, because it needs all branches to
# determine its version :-(
RUN \
git clone https://git.astron.nl/RD/idg.git && \
mkdir idg/build && \
cd idg/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ && \
make install -j`nproc`
RUN \
git clone https://gitlab.com/aroffringa/aoflagger.git --depth 1 && \
mkdir aoflagger/build && \
cd aoflagger/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=${portable} && \
make install -j`nproc`
RUN \ apt-get install -y libboost-python-dev libboost-numpy-dev && \
git clone https://github.com/lofar-astron/LOFARBeam.git --depth 1 && \
mkdir LOFARBeam/build && \
cd LOFARBeam/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ && \
make install -j`nproc`
RUN \
git clone https://git.astron.nl/RD/EveryBeam.git --depth 1 && \
mkdir EveryBeam/build && \
cd EveryBeam/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ && \
make install -j`nproc`
RUN \
git clone https://git.astron.nl/RD/DP3.git --depth 1 && \
mkdir DP3/build && \
cd DP3/build && \
cmake ../ \
-DCMAKE_INSTALL_PREFIX=/usr/local/ \
-DPORTABLE=${portable} \
-DAOFlagger_DIR=/usr/local/ && \
make install -j`nproc`
RUN \
git clone https://gitlab.com/aroffringa/wsclean.git --depth 1 && \
mkdir wsclean/build && \
cd wsclean/build && \
cmake ../ -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=${portable} && \
make install -j`nproc`
#---------------------------------------------------------------------------
# The image is now rebuild without adding the source, to get a smaller image
# Further binary and/or Python dependencies are also added here.
#---------------------------------------------------------------------------
FROM ubuntu:20.04 as runner
COPY --from=builder /usr/local/ /usr/local
RUN chmod +rx /usr/local/bin/*
SHELL ["/bin/bash", "-c"]
RUN export DEBIAN_FRONTEND=noninteractive && \
apt-get update && \
apt-get install -y \
bison \
git \
casacore-data \
casacore-tools \
flex \
gfortran \
libboost-date-time1.71 \
libboost-filesystem1.71 \
libboost-numpy1.71 \
libboost-program-options1.71 \
libboost-python1.71 \
libboost-system1.71 \
libboost-test1.71 \
libcasa-casa4 \
libcasa-fits4 \
libcasa-measures4 \
libcasa-ms4 \
libcasa-tables4 \
libcfitsio8 \
libfftw3-3 \
libgsl23 \
liblua5.3-0 \
libncurses5 \
libgtkmm-3.0 \
libhdf5-cpp-103 \ libpng16-16 \
nodejs \
pybind11-dev \
python3 \
python3-casacore \
python3-h5py \
python3-matplotlib \
python3-numpy \
python3-pip \
python3-scipy \
python3-sphinx \
tar \
wget \
wcslib-dev && \
rm -rf /var/lib/apt/lists/*
ARG TOIL_VERSION=3.20.0
ARG CASACORE_TAG=master
ARG LSMTool_TAG=master
ARG LoSoTo_TAG=master
ARG STMAN_TAG=master
ARG Dysco_TAG=master
ARG LofarBeam_TAG=master
ARG DP3_TAG=master
ARG IDG_TAG=master
ARG Everybeam_TAG
ARG AOFlagger_TAG
ARG RMextract_TAG=master
ARG WSClean_TAG
LABEL \
casacore.version.tag=${CASACORE_TAG} \
toil.version=${TOIL_VERSION} \
LSMTool.version.tag=${LSMTool_TAG} \
LoSoTo.version.tag=${LoSoTo_TAG} \
STMAN.version.tag=${STMAN_TAG} \
Dysco.version.tag=${Dysco_TAG} \
LOFARBeam.version.tag=${LofarBeam_TAG} \
DP3.version.tag=${DP3_TAG} \
IDG.version.tag=${IDG_TAG} \
Everybeam.version.tag=${Everybeam_TAG} \
AOFlagger.version.tag=${AOFlagger_TAG} \
RMextract.version.tag=${RMextract_TAG} \
WSClean.version.tag=${WSClean_TAG}
ENV PREFACTOR_VERSION='master' \
PREFACTOR_NAME=prefactor \
LC_ALL=C.UTF-8 \
PREFACTOR_DATA_ROOT=/usr/local/share/prefactor \
PYTHONPATH="/usr/local/bin:/usr/local/lib/python3.8/site-packages"
RUN \
# Install WSRT Measures (extra casacore data)
# Note: The file on the ftp site is updated daily. When warnings regarding leap
# seconds appear, ignore them or regenerate the docker image.
wget -q -O /WSRT_Measures.ztar ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar \
&& cd /var/lib/casacore/data \
&& tar xfz /WSRT_Measures.ztar \
&& rm /WSRT_Measures.ztar && \
\
# Install cwtool & cwl-runner
python3 -m pip install --upgrade pip && \
python3 -m pip install cwltool cwl-runner && \
\
# Install Prefactor
git clone https://git.astron.nl/eosc/prefactor3-cwl.git ${PREFACTOR_NAME} --branch ${PREFACTOR_VERSION} --depth 1 && \
cd ${PREFACTOR_NAME} && \
pip3 install --upgrade $PWD && \
cd .. && \
rm -rfv ${PREFACTOR_NAME} && \ \
# A user 'lofaruser' is added (this might be legacy -- not sure this is
# still relevant).
mkdir /home/lofaruser/ && \
groupadd -r lofaruser && \
useradd --no-log-init -r -g lofaruser lofaruser && \
chown lofaruser:lofaruser /home/lofaruser && \
\
# Try to run the compiled tools to make sure they run without
# a problem (e.g. no missing libraries).
aoflagger --version && \
DP3 --version && \
wsclean --version
WORKDIR /home/lofaruser
USER lofaruser