DP3.DemixerStepGenerator.cwl

#!/usr/bin/env cwl-runner

class: Workflow
cwlVersion: v1.1
$namespaces:
  sbg: 'https://www.sevenbridges.com/'
id: demix_step_generator

inputs:
  - id: steps
    type: Any[]?
    default: []
  - id: step_name
    type: string
    doc: unique name for the step
    default: demix
  - id: baseline
    default: ""
    type: string
    doc: Baselines to demix. See Description of baseline selection parameters.
  - id: blrange
    default: []
    type: double[]
    doc: Baselines to demix. See Description of baseline selection parameters.
  - id: corrtype
    default: cross
    type: string
    doc: >-
      Baselines to demix. Correlation type to match? Must be auto, cross, or an
      empty string.
  - id: timestep
    default: 1
    type: int
    doc: >-
      Number of time slots to average when subtracting. It is truncated if
      exceeding the actual number of times. Note that the data itself will also
      be averaged by this amount.
  - id: freqstep
    default: 1
    type: int
    doc: >-
      Number of channels to average when subtracting. It is truncated if
      exceeding the actual number of channels. Note that the data itself will
      also be averaged by this amount.
  - id: demixtimestep
    default: 0
    type: int
    doc: >-
      Number of time slots to average when demixing. It is truncated if
      exceeding the actual number of times. It defaults to the averaging used
      for the subtract.
  - id: demixfreqstep
    default: 0
    type: int
    doc: >-
      Number of channels to average when demixing. It is truncated if exceeding
      the actual number of channels. It defaults to the averaging used for the
      subtract.
  - id: ntimechunk
    default: null
    type: int
    doc: >-
      Number of demix time slots (after averaging) that are processed jointly in
      as much a parallel way as possible. If subtract uses different time
      averaging, it has to fit integrally.
  - id: skymodel
    default: sky
    type: [File, Directory, string]
    doc: The name of the SourceDB to use (i.e., the output of makesourcedb).
  - id: instrumentmodel
    default: instrument
    type: string
    doc: >-
      The name of the ParmDB to use. The ParmDB does not need to exist. If it
      does not exist it will be created.
  - id: subtractsources
    default: null
    type: string[]?
    doc: >-
      Names of the sources to subtract. If none are given, demixing comes down
      to averaging. The sources must exist as patches in the SourceDB.
  - id: modelsources
    default: []
    type: string[]
    doc: >-
      Names of sources with models to take into account when solving. the
      sources must exist as patches in the SourceDB. Note that the target should
      NOT be part of this parameter. If a model of the target has to be used, it
      has to be given in parameter targetsource.
  - id: targetsource
    default: ''
    type: string
    doc: >-
      It can be used to specify the name of the source model of the target. If
      given, the target source model (its patch in the SourceDB) is taken into
      account when solving; in this case parameter othersources cannot be given.
      It cannot be given if ignoretarget=true. If not given, the target is
      projected away or ignored (depending on parameter ignoretarget).
  - id: ignoretarget
    default: false
    type: boolean
    doc: false = project the target source away; true = ignore the target
  - id: othersources
    default: []
    type: string[]
    doc: >-
      Names of sources of which the direction is taken into account when
      demixing by projecting the directions away. The direction needs to be
      specified if the source is unknown (which is usually the case). It can be
      done using parameters <step>.<sourcename>.phasecenter.
  - id: propagatesolutions
    default: true
    type: boolean
    doc: >-
      If set to true, solutions of a time slot are used as initial values for
      the next time slot. If set to false, the diagonal elements of the Jones
      matrix are initialized to one and the off-diagonal elements to zero.
  - id: defaultgain
    default: 1
    type: double
    doc: >-
      The default and initial gain for the directional gains that are computed
      internally.
  - id: maxiter
    default: 50
    type: int
    doc: Maximum number of iterations used in the LM solve
outputs:
- id: augmented_steps
  outputSource:
    - DP3_GenericStep/augmented_steps
  type: Any[]

steps:
  - id: DP3_GenericStep
    in:
    - id: steps
      source: steps
    - id: output_files
      default: ["instrumentmodel"]

    - id: parameters
      valueFrom: $(inputs)
    - id: step_id
      source: step_name
    - id: step_type
      default: 'demixer'
    - id: baseline
      source: baseline
    - id: blrange
      source: blrange
    - id: corrtype
      source: corrtype
    - id: timestep
      source: timestep
    - id: freqstep
      source: freqstep
    - id: demixtimestep
      source: demixtimestep
    - id: demixfreqstep
      source: demixfreqstep
    - id: ntimechunk
      source: ntimechunk
    - id: skymodel
      source: skymodel
    - id: instrumentmodel
      source: instrumentmodel
    - id: subtractsources
      source: subtractsources
    - id: modelsources
      source: modelsources
    - id: targetsource
      source: targetsource
    - id: ignoretarget
      source: ignoretarget
    - id: othersources
      source: othersources
    - id: propagatesolutions
      source: propagatesolutions
    - id: defaultgain
      source: defaultgain
    - id: maxiter
      source: maxiter
    out:
      - augmented_steps
    run: ../steps/DP3.GenericStep.cwl
requirements:
  - class: StepInputExpressionRequirement
  - class: InlineJavascriptRequirement
  - class: MultipleInputFeatureRequirement