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Mattia Mancini authoredFormer-commit-id: c23602be
Mattia Mancini authoredFormer-commit-id: c23602be
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ndppp_prep_cal.cwl 6.94 KiB
class: Workflow
cwlVersion: v1.0
id: ndppp_prep_cal
label: ndppp_prep_cal
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: baselines_to_flag
type: 'string[]'
'sbg:x': 732.2234497070312
'sbg:y': 79.11939239501953
- id: elevation_to_flag
type: string
'sbg:x': 815.8416137695312
'sbg:y': -281.40777587890625
- id: min_amplitude_to_flag
type: float
'sbg:x': 964.3058471679688
'sbg:y': 191.110595703125
- id: memoryperc
type: int
'sbg:x': 136.78256225585938
'sbg:y': -341.9549560546875
- id: raw_data
type: boolean
'sbg:x': 444.4574279785156
'sbg:y': -343.6958312988281
- id: demix
type: boolean
'sbg:x': 1736.6195068359375
'sbg:y': -298.45196533203125
- id: msin
type: Directory?
'sbg:x': 2306.83056640625
'sbg:y': 318.2810363769531
- id: skymodel
type: File
'sbg:x': 1335.2567138671875
'sbg:y': 148.68453979492188
- id: timeresolution
type: float
'sbg:x': 2021.81787109375
'sbg:y': -352.4759216308594
- id: freqresolution
type: float
'sbg:x': 1999.5889892578125
'sbg:y': 170.7563934326172
- id: demix_timestep
type: int
'sbg:x': 1371.962646484375
'sbg:y': 307.4278259277344
- id: demix_freqstep
type: int
'sbg:x': 1465.0855712890625
'sbg:y': 450.8930358886719
- id: demix_baseline
type: string
'sbg:x': 1585.496826171875
'sbg:y': 588.0062866210938
- id: target_source
type: string
'sbg:x': 1439.47314453125
'sbg:y': -325.6144104003906
- id: ntimechunk
type: int
'sbg:x': 1149.4033203125
'sbg:y': 349.2409362792969
- id: subtract_sources
type: 'string[]?'
'sbg:x': 1257.9327392578125 'sbg:y': -290.095703125
outputs:
- id: msout
outputSource:
- dppp/msout
type: Directory
'sbg:x': 2856.537841796875
'sbg:y': 53.67763900756836
- id: logfile
outputSource:
- dppp/logfile
type: File?
'sbg:x': 2857.9423828125
'sbg:y': 253.50680541992188
- id: parset
outputSource:
- parsetgenerator/parset
type: File
'sbg:x': 2598.6884765625
'sbg:y': -303.1161804199219
steps:
- id: flagbaseline
in:
- id: steps
source:
- process_raw_data_select/selected_steps
- id: step_name
default: flagbaseline
- id: baseline
source:
- baselines_to_flag
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
'sbg:x': 955.2450561523438
'sbg:y': -75.71149444580078
- id: flagelev
in:
- id: steps
source:
- flagbaseline/augmented_steps
- id: step_name
default: flagelev
- id: elevation
source: elevation_to_flag
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
'sbg:x': 1187.4771728515625
'sbg:y': -83
- id: process_raw_data_select
in:
- id: select_a
source: raw_data
- id: a_steps
source:
- aoflag/augmented_steps
- id: b_steps
default: []
out:
- id: selected_steps
run: ../lofar-cwl/steps/DP3.Selector.cwl
label: Selector
'sbg:x': 621.4892578125
'sbg:y': -71.31844329833984
- id: flagamp
in:
- id: steps
source:
- flagelev/augmented_steps - id: step_name
default: flagamp
- id: amplmin
source: min_amplitude_to_flag
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
'sbg:x': 1385.993408203125
'sbg:y': -42.28850555419922
- id: flagedge
in:
- id: steps
default: []
- id: step_name
default: flagedge
- id: chan
default: '[0..nchan/32-1,31*nchan/32..nchan-1]'
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
'sbg:x': 122.25408935546875
'sbg:y': -54.06163024902344
- id: aoflag
in:
- id: steps
source:
- flagedge/augmented_steps
- id: step_name
default: aoflag
- id: memoryperc
source: memoryperc
- id: keepstatistics
default: false
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.AOFlaggerStepGenerator.cwl
'sbg:x': 369.9876708984375
'sbg:y': -38.086280822753906
- id: demix_select
in:
- id: select_a
source: demix
- id: a_steps
source:
- demixstepgenerator/augmented_steps
- id: b_steps
source:
- flagamp/augmented_steps
out:
- id: selected_steps
run: ../lofar-cwl/steps/DP3.Selector.cwl
label: demix?
'sbg:x': 1974.7406005859375
'sbg:y': -32.03063201904297
- id: demixstepgenerator
in:
- id: steps
source:
- flagamp/augmented_steps
- id: step_name
default: demixer
- id: baseline
source: demix_baseline
- id: demixtimestep
source: demix_timestep
- id: demixfreqstep
source: demix_freqstep
- id: ntimechunk
source: ntimechunk
- id: skymodel source: skymodel
- id: subtractsources
source:
- subtract_sources
- id: targetsource
source: target_source
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.DemixerStepGenerator.cwl
'sbg:x': 1676.6593017578125
'sbg:y': 90.7158203125
- id: parsetgenerator
in:
- id: steps
source:
- average_step_generator/augmented_steps
out:
- id: parset
- id: input_files
- id: input_directories
- id: output_file_names
- id: output_directory_names
run: ../lofar-cwl/steps/DP3.ParsetGenerator.cwl
'sbg:x': 2340.85400390625
'sbg:y': -79.32791900634766
- id: dppp
in:
- id: parset
source: parsetgenerator/parset
- id: msin
source: msin
- id: msout_name
source: msin
valueFrom: $("out_"+self.basename)
- id: secondary_files
source:
- parsetgenerator/input_files
- id: secondary_directories
source:
- parsetgenerator/input_directories
- id: output_file_names
source: parsetgenerator/output_file_names
- id: output_directory_names
source: parsetgenerator/output_directory_names
out:
- id: msout
- id: secondary_output_files
- id: secondary_output_directories
- id: logfile
run: ../lofar-cwl/steps/DPPP.cwl
'sbg:x': 2669.29345703125
'sbg:y': -42.129730224609375
- id: average_step_generator
in:
- id: steps
source:
- demix_select/selected_steps
- id: step_name
default: averager
- id: timeresolution
source: timeresolution
- id: freqresolution
source: freqresolution
out:
- id: augmented_steps
run: ../lofar-cwl/steps/DP3.AveragerStepGenerator.cwl
'sbg:x': 2158.297119140625
'sbg:y': -55.93873977661133
requirements:
- class: SubworkflowFeatureRequirement