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dpppconcat.cwl 3.22 KiB
class: CommandLineTool
cwlVersion: v1.0
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: dpppconcat
baseCommand:
- DPPP
inputs:
- id: msin
type: 'Directory[]'
doc: Input Measurement Set
- id: msin_fname
doc: Input Measurement Set string (including dummy.ms)
type: 'string[]'
inputBinding:
position: 0
prefix: msin=
separate: false
itemSeparator: ','
valueFrom: "[$(self.join(','))]"
- id: msout_name
type: string
inputBinding:
prefix: msout=
separate: false
shellQuote: false
position: 0
- id: msin_datacolumn
type: string
inputBinding:
prefix: msin.datacolumn=
separate: false
shellQuote: false
position: 0
doc: Input data Column
default: DATA
- id: msout_datacolumn
type: string
inputBinding:
prefix: msout.datacolumn=
separate: false
shellQuote: false
position: 0
default: DATA
- id: filter_baselines
type: string
inputBinding:
prefix: filter.baseline=
separate: false
shellQuote: true
position: 0
valueFrom: $(self)
default: null
- id: filter_remove
type: boolean
inputBinding:
prefix: filter.remove=True
shellQuote: false
position: 0
default: false
- id: writefullresflag
type: boolean
inputBinding:
prefix: msout.writefullresflag=True
shellQuote: false
position: 0
default: false
- id: overwrite
type: boolean
inputBinding: prefix: msout.overwrite=True
shellQuote: false
position: 0
default: false
- id: storagemanager
type: string
inputBinding:
prefix: msout.storagemanager=
separate: false
shellQuote: false
position: 0
default: ''
- id: databitrate
type: int?
inputBinding:
prefix: msout.storagemanager.databitrate=
separate: false
shellQuote: false
position: 0
- id: missingdata
type: boolean?
inputBinding:
prefix: msin.missingdata=True
separate: false
shellQuote: false
position: 0
- id: baseline
type: string?
inputBinding:
prefix: msin.baseline=
separate: false
shellQuote: true
position: 0
default: '*'
- id: avg_timeresolution
type: int?
inputBinding:
prefix: avg.timeresolution=
separate: false
shellQuote: false
position: 0
default: 1
- id: avg_freqresolution
type: string?
inputBinding:
prefix: avg.freqresolution=
separate: false
shellQuote: false
position: 0
default: 12.205kHz
outputs:
- id: msout
doc: Output Measurement Set
type: Directory
outputBinding:
glob: $(inputs.msout_name)
- id: logfile
type: 'File[]'
outputBinding:
glob: concat*.log
arguments:
- 'steps=[filter,avg,count]'
- msin.orderms=False
- avg.type=average
requirements:
- class: ShellCommandRequirement
- class: InlineJavascriptRequirement
expressionLib:
- { $include: 'utils.js' }
hints: - class: DockerRequirement
dockerPull: 'lofareosc/prefactor:HBAcalibrator'
- class: InitialWorkDirRequirement
listing:
- entry: $(inputs.msin)
writable: false
stdout: concat.log
stderr: concat_err.log