prefactor_calibrator_image.cwl

class: Workflow
cwlVersion: v1.0
id: prefactor_calibrator_image
label: prefactor_calibrator_image
$namespaces:
  sbg: 'https://www.sevenbridges.com/'
inputs:
  - id: msin
    type: 'Directory[]'
    'sbg:x': -549
    'sbg:y': -168
outputs:
  - id: image
    outputSource:
      - wsclean/image
    type: 'File[]'
    'sbg:x': 206
    'sbg:y': -189
  - id: dirty_image
    outputSource:
      - wsclean/dirty_image
    type: 'File[]'
    'sbg:x': 271
    'sbg:y': -87
  - id: image_1
    outputSource:
      - wsclean_1/image
    type: 'File[]'
    'sbg:x': -133
    'sbg:y': -405
  - id: dirty_image_1
    outputSource:
      - wsclean_1/dirty_image
    type: 'File[]'
    'sbg:x': -26
    'sbg:y': -292
steps:
  - id: prefactor_calibrator
    in:
      - id: msin
        source:
          - msin
      - id: raw_data
        default: true
      - id: demix
        default: false
    out:
      - id: demix_parmdb
      - id: output_ms
    run: ./prefactor_calibrator.cwl
    label: prefactor_calibrator
    'sbg:x': -234
    'sbg:y': -94
  - id: wsclean
    in:
      - id: image_name
        source: msin
        valueFrom: $(inputs.msin.basename)
      - id: msin
        source: prefactor_calibrator/output_ms
    out:
      - id: dirty_image
      - id: image
    run: steps/wsclean.cwl
    label: WSClean
    scatter:
      - msin
    'sbg:x': 6
    'sbg:y': -102
  - id: wsclean_1
    in:
      - id: image_name
        source: msin
        valueFrom: flagged_$(inputs.msin.basename)
      - id: msin
        source: msin
    out:
      - id: dirty_image
      - id: image
    run: steps/wsclean.cwl
    label: WSClean
    scatter:
      - msin
    'sbg:x': -317
    'sbg:y': -302
requirements:
  - class: SubworkflowFeatureRequirement
  - class: ScatterFeatureRequirement
  - class: StepInputExpressionRequirement
  - class: InlineJavascriptRequirement