Merge branch 'HBA_calibrator' of git.astron.nl:eosc/prefactor3-cwl into HBA_calibrator

8 jobs for HBA_calibrator in 9 minutes and 55 seconds (queued for 1 second)
Status Job ID Name Coverage
  Validate Cwl Scripts
passed #32645
validate_scripts

00:04:49

 
  Test Steps
passed #32647
blsmooth

00:02:01

failed #32646
allowed to fail
find_skymodel_cal

00:01:23

 
  Integration Test
failed #32649
faraday_rotation

00:00:46

failed #32652
flag_average

00:00:42

failed #32648
pol_align

00:01:15

failed #32650
prefactor_calibrator

00:01:59

failed #32651
toil

00:01:05

 
Name Stage Failure
failed
flag_average Integration Test
the `freqresolution` field is not valid because
tried string but
the value is not string

INFO [workflow ] completed permanentFail
WARNING Final process status is permanentFail
Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1
failed
prefactor_calibrator Integration Test
  File "/usr/local/lib/python3.6/dist-packages/cwltool/workflow.py", line 916, in receive_output
if field in jobout:
TypeError: argument of type 'NoneType' is not iterable
ERROR Workflow error, try again with --debug for more information:
argument of type 'NoneType' is not iterable

Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1
failed
toil Integration Test
  File "/usr/local/lib/python3.6/dist-packages/toil/common.py", line 1054, in _runMainLoop
jobCache=self._jobCache).run()
File "/usr/local/lib/python3.6/dist-packages/toil/leader.py", line 246, in run
raise FailedJobsException(self.config.jobStore, self.toilState.totalFailedJobs, self.jobStore)
toil.leader.FailedJobsException
Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1
failed
pol_align Integration Test
INFO [job losoto_residual] completed success
INFO [step losoto_residual] completed success
ERROR [workflow ] Cannot collect workflow output: Workflow contains multiple inbound links to a single parameter but MultipleInputFeatureRequirement is not declared.
INFO [workflow ] completed permanentFail
WARNING Final process status is permanentFail
Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1
failed
faraday_rotation Integration Test
INFO /usr/local/bin/cwltool 2.0.20200107113851
INFO Resolved 'subworkflow/faraday_rotation.cwl' to 'file:///builds/eosc/prefactor3-cwl/subworkflow/faraday_rotation.cwl'
ERROR Workflow error, try again with --debug for more information:
Invalid job input record:
subworkflow/faraday_rotation.cwl:15:5: Missing required input parameter 'input_h5parm'

Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1
failed
find_skymodel_cal Test Steps
Invalid job input record:
test_jobs/find_skymodel_cal.json:2:5: the `msin` field is not valid because
the value {'basename': 'L570745_SB000_uv_first10.MS',
'class': 'Directory',
'location': 'file:///data/L570745_SB000_uv_first10.MS'} is not a list, expected list of Directory

Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1