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Add creation of plots to the calibrate workflow

David Rafferty requested to merge add_plots into master

This MR add several steps to the calibrate workflow to make plots of the calibration solutions, per RAP-215. The plots are stored in work_dir/plots/ (e.g. work_dir/plots/calibrate_1) as PNG files. A number of improvements and formatting fixes were also made to the plotrapthor script.

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