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Add initial top-level workflow

Merged Mick Veldhuis requested to merge add-pipeline-workflow into main
All threads resolved!

This MR creates an initial top-level CWL workflow for the pre-processing pipeline, which calls the preprocessing step: preprocess.cwl. Additionally, a workflow test input JSON is provided.

Note: the output MSs are created by appending .prepout to the original name of the MS. This is temporary and subject to change.

Edited by Mick Veldhuis

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  • Matthijs van der Wild
    • Resolved by Matthijs van der Wild

      Looks good to me. The files in /tests point to MSs that aren't part of the repository, so it isn't possible to run these tests locally. I don't know if that is possible in the first place, but it may be nice to have test data that doesn't point to data that is inaccessible.

  • Mick Veldhuis added 1 commit

    added 1 commit

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  • Mick Veldhuis added 1 commit

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    • 09215be4 - Add notes on testing the pipeline

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  • Matthijs van der Wild resolved all threads

    resolved all threads

  • Matthijs van der Wild approved this merge request

    approved this merge request

  • Mick Veldhuis mentioned in commit c97453c4

    mentioned in commit c97453c4

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