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Deprecate makesourcedb (RAP-481)

Merged alex requested to merge deprecate_makesourcedb into master
class: CommandLineTool
cwlVersion: v1.2
id: make_sourcedb
id: merge_skymodels
baseCommand:
- makesourcedb
- merge_skymodels.py
inputs:
- id: sky_model
- id: inmodel1
type:
- File?
- string?
default: '$LINC_DATA_ROOT/skymodels/Ateam_LBA_CC.skymodel'
inputBinding:
position: 0
prefix: in=
prefix: --inmodel1=
separate: false
shellQuote: false
- id: input_sourcedb
- id: inmodel2
type:
- File?
- Directory?
inputBinding:
position: 2
prefix: out=
separate: false
shellQuote: false
- default: 'Ateam.sourcedb'
id: output_file_name
type: string?
inputBinding:
position: 1
prefix: out=
separate: false
shellQuote: false
- default: blob
id: outtype
type: string?
- string?
default: '$LINC_DATA_ROOT/skymodels/Ateam_LBA_CC.skymodel'
inputBinding:
position: 2
prefix: outtype=
prefix: --inmodel2=
separate: false
shellQuote: false
- default: '"<"'
id: format
- id: outmodel
type: string?
default: 'output.skymodel'
inputBinding:
position: 3
prefix: format=
separate: false
shellQuote: false
- default: false
id: append
type: boolean?
inputBinding:
position: 4
prefix: append=T
prefix: --outmodel=
separate: false
shellQuote: false
- default: make_sourcedb.log
id: logname
type: string?
outputs:
- id: sourcedb
type:
- Directory
- File
outputBinding:
glob: $(inputs.output_file_name)
- id: log
- id: skymodel_out
type: File
outputBinding:
glob: $(inputs.logname)
label: make_sourcedb_ateam
glob: $(inputs.outmodel)
- id: logfile
type: File[]
outputBinding:
glob: 'merge_skymodels*.log'
label: merge_skymodels
hints:
- class: DockerRequirement
dockerPull: 'astronrd/linc'
stdout: $(inputs.logname)
requirements:
- class: InlineJavascriptRequirement
- class: ShellCommandRequirement
- class: InitialWorkDirRequirement
listing:
- entry: $(inputs.input_sourcedb)
writable: true
\ No newline at end of file
stdout: merge_skymodels.log
stderr: merge_skymodels_err.log
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