diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 9d942088effa0416e62dc05eb56e7ab076ff2177..d333fed475701e1ecf5cef88d38245902f679505 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -46,39 +46,34 @@ validate_scripts: blsmooth: stage: test_steps - allow_failure: true needs: ["download_data"] script: - cwltool --no-container steps/blsmooth.cwl test_jobs/blsmooth.json find_skymodel_cal: stage: test_steps - allow_failure: true needs: ["download_data"] script: - cwltool --no-container --preserve-environment PYTHONPATH steps/find_skymodel_cal.cwl test_jobs/find_skymodel_cal.json check_ateam_separation: stage: test_steps - allow_failure: true needs: ["download_data"] script: - - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH steps/check_ateam_separation.cwl test_jobs/check_ateam_separation.json + - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH steps/check_ateam_separation.cwl test_jobs/check_ateam_separation.json run_hba_calibrator: stage: test_full - allow_failure: true needs: ["download_data"] script: - - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json + - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_calibrator run_hba_target: stage: test_full - allow_failure: true needs: ["download_data"] script: - - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_target.cwl test_jobs/HBA_target.json + - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_target.cwl test_jobs/HBA_target.json - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_target build-doc: diff --git a/test_jobs/HBA_target.json b/test_jobs/HBA_target.json index 24fdcf26bc485a56b22a99e54bb1e4a62ed61ec4..f6f5b0246b4318822daaba7c354c0ea54953cfb8 100644 --- a/test_jobs/HBA_target.json +++ b/test_jobs/HBA_target.json @@ -85,7 +85,7 @@ "ncores": 12, "cal_solutions": { "class": "File", - "path": "/builds/eosc/prefactor3-cwl/data/results_calibrator/cal_solutions.h5" + "path": "../data/results_calibrator/cal_solutions.h5" }, "A-Team_skymodel": { "class": "File",