diff --git a/.gitattributes b/.gitattributes
index c3e9fc9c0fed777d80dd3602c7c7b4197f59f6c9..e83ceca53f1262c4f8708366c03f05ee66d9f358 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -298,14 +298,19 @@ CEP/DP3/AOFlagger/scripts/CMakeLists-root.txt -text
CEP/DP3/AOFlagger/scripts/distributed/async.sh -text
CEP/DP3/AOFlagger/scripts/distributed/baseline-slopes.sh -text
CEP/DP3/AOFlagger/scripts/distributed/collect-baseline.sh -text
+CEP/DP3/AOFlagger/scripts/distributed/collect-eor.sh -text
CEP/DP3/AOFlagger/scripts/distributed/collect.sh -text
+CEP/DP3/AOFlagger/scripts/distributed/dist-eor.sh -text
CEP/DP3/AOFlagger/scripts/distributed/killall.sh -text
+CEP/DP3/AOFlagger/scripts/distributed/list-nodes.sh -text
CEP/DP3/AOFlagger/scripts/distributed/list.sh -text
CEP/DP3/AOFlagger/scripts/distributed/nodes.txt -text
CEP/DP3/AOFlagger/scripts/distributed/process.sh -text
CEP/DP3/AOFlagger/scripts/distributed/progress.sh -text
CEP/DP3/AOFlagger/scripts/distributed/sets.txt -text
+CEP/DP3/AOFlagger/scripts/distributed/single-eor.sh -text
CEP/DP3/AOFlagger/scripts/distributed/single.sh -text
+CEP/DP3/AOFlagger/scripts/distributed/statistics.rfis -text
CEP/DP3/AOFlagger/scripts/package-without-lofarstman.sh -text
CEP/DP3/AOFlagger/scripts/package.sh -text
CEP/DP3/AOFlagger/src/CMakeLists.txt -text
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/async.sh b/CEP/DP3/AOFlagger/scripts/distributed/async.sh
index a9173690a35449790f7fcefb799aeabb3f79ae35..e82837edb2f8fa78484d812e5f463df1aee2b21e 100755
--- a/CEP/DP3/AOFlagger/scripts/distributed/async.sh
+++ b/CEP/DP3/AOFlagger/scripts/distributed/async.sh
@@ -3,7 +3,7 @@ echo Killing existing rficonsoles...
rm out -rvf
mkdir -p out
# how many ms per node?
-declare -i CPN=6
+declare -i CPN=20
declare -i i=1
declare -i totalms=0
sets="`cat sets.txt`"
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/collect-eor.sh b/CEP/DP3/AOFlagger/scripts/distributed/collect-eor.sh
new file mode 100755
index 0000000000000000000000000000000000000000..f5c5271c0fea252c1125072aa482e16e8d879bf5
--- /dev/null
+++ b/CEP/DP3/AOFlagger/scripts/distributed/collect-eor.sh
@@ -0,0 +1,34 @@
+#! /bin/bash
+nodes="`cat nodes.txt`"
+mkdir -p out
+declare -i runningcount=0
+declare -i copyingcount=0
+declare -i notrunningcount=0
+for n in ${nodes} ; do
+ runningrfi="`ssh $n -C \"ps aux\"|grep rficonsole|grep ${USER}|grep -v grep|grep -v defun`"
+ if [[ "${runningrfi}" != "" ]] ; then
+ echo -n -e "$n: running "
+ runningcount=${runningcount}+1
+ else
+ runningscp="`ssh $n -C \"ps aux\"|grep scp|grep ${USER}|grep -v grep|grep -v defun`"
+ if [[ "${runningscp}" != "" ]] ; then
+ copyingcount=${copyingcount}+1
+ echo -n -e "$n: copying "
+ else
+ notrunningcount=${notrunningcount}+1
+# echo -n -e "$n: NOT running! "
+ fi
+ fi
+ mkdir -p "out/${n}"
+ scp -q "${n}:/data1/users/lofareor/${USER}/stats/out/${n}/*.txt" "out/${n}/"
+ nodeprocs=`ssh ${n} -C "ls -1 /data1/users/lofareor/${USER}/stats/out/${n}/|grep -v txt"`
+ for p in ${nodeprocs} ; do
+ mkdir -p "out/${n}/${p}"
+ scp -rq "${n}:/data1/users/lofareor/${USER}/stats/out/${n}/${p}/*count*.txt" "out/${n}/${p}/"
+ scp -rq "${n}:/data1/users/lofareor/${USER}/stats/out/${n}/${p}/stdout.txt" "out/${n}/${p}/"
+ scp -rq "${n}:/data1/users/lofareor/${USER}/stats/out/${n}/${p}/stderr.txt" "out/${n}/${p}/"
+ done
+ echo -e -n .
+done
+wait
+echo -n -e "\nRunning: ${runningcount} Copying: ${copyingcount} Stopped: ${notrunningcount}\n"
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/dist-eor.sh b/CEP/DP3/AOFlagger/scripts/distributed/dist-eor.sh
new file mode 100755
index 0000000000000000000000000000000000000000..430c6cf3c7a1f5693e113d531ad57e5af9f72fb1
--- /dev/null
+++ b/CEP/DP3/AOFlagger/scripts/distributed/dist-eor.sh
@@ -0,0 +1,42 @@
+echo Killing existing rficonsoles...
+rm out -rvf
+mkdir -p out
+# how many ms per node?
+declare -i CPN=4
+declare -i i=1
+declare -i totalms=0
+sets="`cat sets.txt`"
+declare -i nodecount=`cat nodes.txt|wc -l`
+echo Node count: ${nodecount}
+declare -i thisnodei=0
+for setname in ${sets} ; do
+ thisnodei=${thisnodei}+1
+ if (( ${thisnodei} > ${CPN} )) ; then
+ i=$i+1
+ thisnodei=1
+ if (( $i > ${nodecount} )) ; then
+ echo Not enough nodes to process \(${CPN} sets per node requested\)
+ exit;
+ fi
+ fi
+ totalms=${totalms}+1
+ A[${i}]="${A[${i}]} ${setname}"
+done
+echo Starting to process $totalms measurement sets...
+nodes="`cat nodes.txt`"
+i=0
+rm -f /tmp/shuffle.txt /tmp/cmds.txt
+for node in ${nodes} ; do
+ i=$i+1
+ echo ssh ${node} "-C" ~/distributed/single-eor.sh ${A[i]} >> /tmp/cmds.txt
+done
+i=0
+cat /tmp/cmds.txt|sort >/tmp/shuffled.txt
+exec</tmp/shuffled.txt
+while read line
+do
+ i=$i+1
+ ${line} &
+ echo Started \#$i: ${line}
+ sleep 60
+done
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/list-nodes.sh b/CEP/DP3/AOFlagger/scripts/distributed/list-nodes.sh
new file mode 100755
index 0000000000000000000000000000000000000000..ae005329b0f344383d459eda759acc71ea741437
--- /dev/null
+++ b/CEP/DP3/AOFlagger/scripts/distributed/list-nodes.sh
@@ -0,0 +1,17 @@
+if [[ "$1" == "" ]] ; then
+ echo Syntax: $0 \<ms\>
+else
+ for (( a=1 ; $a<81 ; a++ )) ; do
+ if (( $a<10 )) ; then
+ node="node00$a"
+ else
+ node="node0$a"
+ fi
+ if [[ "`ssh ${node} -C ls /data?/users/lofareor/|grep $1`" != "" ]] ; then
+ nodesubs="`ssh ${node} -C \"find /data?/users/lofareor/$1/\"|grep SB|grep \\\.MS\/ -v`"
+ for n in ${nodesubs} ; do
+ echo /net/${node}$n
+ done
+ fi
+ done
+fi
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/nodes.txt b/CEP/DP3/AOFlagger/scripts/distributed/nodes.txt
index e0da7e2f0d50d85a661d6dd40add2ff7907ff25a..6dc7864118eeeb7f0033cd7b61cabe8e1d08c895 100644
--- a/CEP/DP3/AOFlagger/scripts/distributed/nodes.txt
+++ b/CEP/DP3/AOFlagger/scripts/distributed/nodes.txt
@@ -1,42 +1,69 @@
-lce014
-lce020
-lce021
-lce022
-lce023
-lce015
-lce024
-lce016
-lce001
-lce002
-lce003
-lce004
-lce005
-lce006
-lce007
-lce008
-lce009
-lce010
-lce011
-lce012
-lce013
-lce034
-lce035
-lce036
-lce037
-lce042
-lce044
-lce045
-lce046
-lce047
-lce048
-lce050
-lce051
-lce052
-lce053
-lce054
-lce055
-lce056
-lce057
-lce058
-lce059
-lce038
+node071
+node002
+node003
+node004
+node005
+node006
+node007
+node008
+node009
+node010
+node011
+node012
+node013
+node014
+node015
+node016
+node017
+node070
+node019
+node020
+node021
+node022
+node023
+node024
+node025
+node026
+node027
+node028
+node029
+node030
+node031
+node032
+node033
+node034
+node035
+node036
+node037
+node038
+node039
+node040
+node041
+node042
+node043
+node044
+node045
+node046
+node047
+node048
+node049
+node050
+node072
+node052
+node053
+node054
+node055
+node056
+node057
+node058
+node059
+node060
+node061
+node062
+node063
+node064
+node065
+node066
+node067
+node068
+node069
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/progress.sh b/CEP/DP3/AOFlagger/scripts/distributed/progress.sh
index fa452bf11a19ee55a526591ab880f6e642ad1928..272297bb0267f1a9c436e3b58e8d0080728e6f2d 100755
--- a/CEP/DP3/AOFlagger/scripts/distributed/progress.sh
+++ b/CEP/DP3/AOFlagger/scripts/distributed/progress.sh
@@ -6,18 +6,19 @@ fi
while true ; do
clear
iteration=${iteration}+1
- for l in `ls -1 out|grep lce` ; do
+ for l in `ls -1 out|grep node` ; do
if [[ -f out/$l/progress.txt ]] ; then
cd out/$l
last=`ls -1|sort -g|tail -n 1`
cd ../..
if [[ -f out/$l/${last}/stdout.txt ]] ; then
- echo $l: `cat out/$l/progress.txt` `cat out/$l/${last}/stdout.txt|grep \%|tail -n 1`
+ echo $l: `cat out/$l/progress.txt` `cat out/$l/${last}/stderr.txt|grep \%|tail -n 1`
else
echo $l: `cat out/$l/progress.txt` -
fi
fi
done
+ echo End of iteration.
sleep 60
collect.sh
sleep 1
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/sets.txt b/CEP/DP3/AOFlagger/scripts/distributed/sets.txt
index 1901fb9d84b1a93b7aa558124e405cff72e17891..81dd7ed2ed9f679c12d812820ecee3a7aebbeecf 100644
--- a/CEP/DP3/AOFlagger/scripts/distributed/sets.txt
+++ b/CEP/DP3/AOFlagger/scripts/distributed/sets.txt
@@ -1,248 +1,248 @@
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diff --git a/CEP/DP3/AOFlagger/scripts/distributed/single-eor.sh b/CEP/DP3/AOFlagger/scripts/distributed/single-eor.sh
new file mode 100755
index 0000000000000000000000000000000000000000..86444e0537c6b9712d41d10c311254d4db7df3b3
--- /dev/null
+++ b/CEP/DP3/AOFlagger/scripts/distributed/single-eor.sh
@@ -0,0 +1,22 @@
+#! /bin/bash
+source /software/users/lofareor/eor-init.sh
+outdir="/data1/users/lofareor/${USER}/stats/out/`hostname`"
+strategy="/home/users/offringa/distributed/statistics.rfis"
+declare -i index=0
+rm -fr ${outdir}
+mkdir -p ${outdir}
+echo single.sh $* > ${outdir}/command.txt
+for f in $* ; do
+ echo ${index} > ${outdir}/progress.txt
+ cdir=${outdir}/${index}
+ rm -fr "${cdir}"
+ mkdir -p ${cdir}
+ cd ${cdir}
+ echo \# "$f" > ${cdir}/command.txt 2>> ${cdir}/stderr.txt
+ echo makeFLAGwritable "$f" >> ${cdir}/command.txt
+ makeFLAGwritable "$f" > ${cdir}/stdout.txt 2>> ${cdir}/stderr.txt
+ echo rficonsole -indirect-read -v -nolog -strategy ${strategy} -j 9 "$f" >> ${cdir}/command.txt
+ rficonsole -indirect-read -v -nolog -strategy ${strategy} -j 9 "$f" >> ${cdir}/stdout.txt 2>> ${cdir}/stderr.txt
+ index=${index}+1
+ rm -fr "${localms}" 2>> ${cdir}/stderr.txt
+done
diff --git a/CEP/DP3/AOFlagger/scripts/distributed/statistics.rfis b/CEP/DP3/AOFlagger/scripts/distributed/statistics.rfis
new file mode 100644
index 0000000000000000000000000000000000000000..e702475dcc98f274dbb99473d3796fbd927299b9
--- /dev/null
+++ b/CEP/DP3/AOFlagger/scripts/distributed/statistics.rfis
@@ -0,0 +1,136 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- This is a Strategy configuration file for the
+rfi detector by André Offringa (offringa@astro.rug.nl).
+-->
+<rfi-strategy format-version="2.3" reader-version-required="2.2">
+ <action type="Strategy">
+ <children>
+ <action type="ForEachBaselineAction">
+ <selection>1</selection>
+ <thread-count>4</thread-count>
+ <data-kind>0</data-kind>
+ <children>
+ <action type="SetFlaggingAction">
+ <new-flagging>0</new-flagging>
+ </action>
+ <action type="ForEachPolarisationBlock">
+ <on-xx>1</on-xx>
+ <on-xy>1</on-xy>
+ <on-yx>1</on-yx>
+ <on-yy>1</on-yy>
+ <on-stokes-i>0</on-stokes-i>
+ <on-stokes-q>0</on-stokes-q>
+ <on-stokes-u>0</on-stokes-u>
+ <on-stokes-v>0</on-stokes-v>
+ <children>
+ <action type="ForEachComplexComponentAction">
+ <on-amplitude>1</on-amplitude>
+ <on-phase>0</on-phase>
+ <on-real>0</on-real>
+ <on-imaginary>0</on-imaginary>
+ <restore-from-amplitude>0</restore-from-amplitude>
+ <children>
+ <action type="IterationBlock">
+ <iteration-count>2</iteration-count>
+ <sensitivity-start>4</sensitivity-start>
+ <children>
+ <action type="ThresholdAction">
+ <base-sensitivity>1</base-sensitivity>
+ <time-direction-flagging>1</time-direction-flagging>
+ <frequency-direction-flagging>1</frequency-direction-flagging>
+ </action>
+ <action type="CombineFlagResults">
+ <children>
+ <action type="FrequencySelectionAction">
+ <threshold>3</threshold>
+ </action>
+ <action type="TimeSelectionAction">
+ <threshold>3.5</threshold>
+ </action>
+ </children>
+ </action>
+ <action type="SetImageAction">
+ <new-image>1</new-image>
+ </action>
+ <action type="ChangeResolutionAction">
+ <time-decrease-factor>3</time-decrease-factor>
+ <frequency-decrease-factor>3</frequency-decrease-factor>
+ <restore-revised>1</restore-revised>
+ <restore-masks>0</restore-masks>
+ <children>
+ <action type="SlidingWindowFitAction">
+ <fit-precision>1e-06</fit-precision>
+ <frequency-direction-kernel-size>5</frequency-direction-kernel-size>
+ <frequency-direction-window-size>15</frequency-direction-window-size>
+ <method>4</method>
+ <time-direction-kernel-size>2.5</time-direction-kernel-size>
+ <time-direction-window-size>10</time-direction-window-size>
+ </action>
+ </children>
+ </action>
+ <action type="SetFlaggingAction">
+ <new-flagging>0</new-flagging>
+ </action>
+ </children>
+ </action>
+ <action type="ThresholdAction">
+ <base-sensitivity>1</base-sensitivity>
+ <time-direction-flagging>1</time-direction-flagging>
+ <frequency-direction-flagging>1</frequency-direction-flagging>
+ </action>
+ </children>
+ </action>
+ </children>
+ </action>
+ <action type="SetFlaggingAction">
+ <new-flagging>4</new-flagging>
+ </action>
+ <action type="StatisticalFlagAction">
+ <enlarge-frequency-size>0</enlarge-frequency-size>
+ <enlarge-time-size>0</enlarge-time-size>
+ <max-contaminated-frequencies-ratio>0.5</max-contaminated-frequencies-ratio>
+ <max-contaminated-times-ratio>0.5</max-contaminated-times-ratio>
+ <minimum-good-frequency-ratio>0.8</minimum-good-frequency-ratio>
+ <minimum-good-time-ratio>0.8</minimum-good-time-ratio>
+ </action>
+ <action type="TimeSelectionAction">
+ <threshold>3.5</threshold>
+ </action>
+ <action type="BaselineSelectionAction">
+ <preparation-step>1</preparation-step>
+ <flag-bad-baselines>0</flag-bad-baselines>
+ <threshold>8</threshold>
+ <smoothing-sigma>0.6</smoothing-sigma>
+ <abs-threshold>0.4</abs-threshold>
+ <make-plot>0</make-plot>
+ </action>
+ <action type="SetFlaggingAction">
+ <new-flagging>6</new-flagging>
+ </action>
+ <action type="WriteFlagsAction" />
+ <action type="PlotAction">
+ <plot-kind>0</plot-kind>
+ <logarithmic-y-axis>0</logarithmic-y-axis>
+ </action>
+ <action type="PlotAction">
+ <plot-kind>1</plot-kind>
+ <logarithmic-y-axis>0</logarithmic-y-axis>
+ </action>
+ <action type="AddStatisticsAction" >
+ <file-prefix></file-prefix>
+ <compare-original-and-alternative>0</compare-original-and-alternative>
+ <separate-baseline-statistics>0</separate-baseline-statistics>
+ </action>
+ </children>
+ </action>
+ <action type="BaselineSelectionAction">
+ <preparation-step>0</preparation-step>
+ <flag-bad-baselines>1</flag-bad-baselines>
+ <threshold>8</threshold>
+ <smoothing-sigma>0.6</smoothing-sigma>
+ <abs-threshold>0.4</abs-threshold>
+ <make-plot>0</make-plot>
+ </action>
+ </children>
+ </action>
+</rfi-strategy>