diff --git a/compress_pipeline.png b/compress_pipeline.png deleted file mode 100644 index 0def180c421d3446b0e04acc9bfcda3ef8ff803d..0000000000000000000000000000000000000000 Binary files a/compress_pipeline.png and /dev/null differ diff --git a/download_and_compress_pipeline.png b/download_and_compress_pipeline.png deleted file mode 100644 index 5c69ce362b67cf859025572274b8f7928682c1f3..0000000000000000000000000000000000000000 Binary files a/download_and_compress_pipeline.png and /dev/null differ diff --git a/steps/combine_inspect_dataset.cwl b/steps/combine_inspect_dataset.cwl index 538a796cd60c5d51791f46504fd2f7f72381cc9d..b79c6036848499447e62e00c143c7e3d4eef4547 100644 --- a/steps/combine_inspect_dataset.cwl +++ b/steps/combine_inspect_dataset.cwl @@ -8,7 +8,8 @@ requirements: - class: InlineJavascriptRequirement hints: - class: DockerRequirement - dockerPull: git.astron.nl:5000/ldv/lofar_quality:latest + # dockerPull: git.astron.nl:5000/ldv/lofar_quality:latest + dockerPull: localhost/lofar_quality_lofarstman:latest - class: NetworkAccess networkAccess: true inputs: diff --git a/steps/create_inspect_dataset.cwl b/steps/create_inspect_dataset.cwl index 42544004f18e73eb4cd55730d5116616403914c6..9f071214cfcb16052f923a97e932ca29928083d6 100644 --- a/steps/create_inspect_dataset.cwl +++ b/steps/create_inspect_dataset.cwl @@ -8,7 +8,8 @@ requirements: - class: InlineJavascriptRequirement hints: - class: DockerRequirement - dockerPull: git.astron.nl:5000/ldv/lofar_quality:latest + # dockerPull: git.astron.nl:5000/ldv/lofar_quality:latest + dockerPull: localhost/lofar_quality_lofarstman:latest - class: NetworkAccess networkAccess: true inputs: diff --git a/steps/extract_quality_metrics.cwl b/steps/extract_quality_metrics.cwl index c47e38a1aad41fae56307b69006f925c46e2f54b..5a371710c868ec0ceb4e05809b6ff2bd989cc4a6 100644 --- a/steps/extract_quality_metrics.cwl +++ b/steps/extract_quality_metrics.cwl @@ -16,6 +16,7 @@ requirements: hints: - class: DockerRequirement dockerPull: git.astron.nl:5000/ldv/lofar_quality:latest + # dockerPull: localhost/lofar_quality_lofarstman - class: NetworkAccess networkAccess: true inputs: @@ -31,4 +32,4 @@ outputs: outputBinding: glob: quality.json loadContents: true - outputEval: $(JSON.parse(self[0].contents)) \ No newline at end of file + outputEval: $(JSON.parse(self[0].contents)) diff --git a/steps/fetch_data.cwl b/steps/fetch_data.cwl index 31cf265a465fa3d6de228939c8d03a18e64f23db..63891b83ade5db85d8c2c72fb1e73ae39daecf77 100644 --- a/steps/fetch_data.cwl +++ b/steps/fetch_data.cwl @@ -32,6 +32,6 @@ requirements: globus-url-copy $turl - | tar -xvf - else echo "Downloading $1 with srmcp" - srmcp $1 file:////`pwd`/$(basename $1) - tar -xvf $(basename $1) + srmcp $1 file:////`pwd`/\$(basename $1) + tar -xvf \$(basename $1) fi