From 60e10967c02a73fe45dfde6b0dc3ac70dc061a25 Mon Sep 17 00:00:00 2001
From: Timo Millenaar <tmillenaar@gmail.com>
Date: Tue, 29 Apr 2025 13:06:50 +0200
Subject: [PATCH] Expose elevation for parset
---
compress_pipeline.cwl | 12 ++++++++----
download_and_compress_pipeline.cwl | 4 ++++
steps/define_parset.cwl | 5 ++++-
3 files changed, 16 insertions(+), 5 deletions(-)
diff --git a/compress_pipeline.cwl b/compress_pipeline.cwl
index 41634ee..f755e55 100644
--- a/compress_pipeline.cwl
+++ b/compress_pipeline.cwl
@@ -16,6 +16,8 @@ inputs:
type: boolean?
- id: msin
type: Directory
+- id: flag_elevation
+ type: string?
outputs:
- id: inspect
@@ -110,7 +112,7 @@ steps:
- id: extract_sip_meta
in:
- id: msin
- source:
+ source:
- dppp/msout
- msin
pickValue: first_non_null
@@ -167,6 +169,8 @@ steps:
source: flag_autocorrelation
- id: is_raw
source: identify_issues/is_raw
+ - id: flag_elevation
+ source: flag_elevation
run: steps/define_parset.cwl
out:
- id: output
@@ -174,7 +178,7 @@ steps:
label: compress
in:
- id: directory
- source:
+ source:
- dppp/msout
- msin
pickValue: first_non_null
@@ -187,12 +191,12 @@ steps:
- id: inspect_step
in:
- id: msin
- source:
+ source:
- dppp/msout
- msin
pickValue: first_non_null
- id: inspect_file_name
- source:
+ source:
- dppp/msout
- msin
pickValue: first_non_null
diff --git a/download_and_compress_pipeline.cwl b/download_and_compress_pipeline.cwl
index 6ad92e4..cc6b6bc 100644
--- a/download_and_compress_pipeline.cwl
+++ b/download_and_compress_pipeline.cwl
@@ -17,6 +17,8 @@ inputs:
type: string[]
- id: is_long_baseline
type: boolean?
+- id: flag_elevation
+ type: string?
outputs:
- id: compressed
@@ -67,6 +69,8 @@ steps:
source: flag_autocorrelation
- id: is_long_baseline
source: is_long_baseline
+ - id: flag_elevation
+ source: flag_elevation
scatter:
- msin
run: ./compress_pipeline.cwl
diff --git a/steps/define_parset.cwl b/steps/define_parset.cwl
index 79ca3f4..d59f3f6 100644
--- a/steps/define_parset.cwl
+++ b/steps/define_parset.cwl
@@ -22,7 +22,7 @@ requirements:
aoflag.strategy=/usr/local/share/aoflagger/strategies/lofar-default.lua
#
flagelev.type=preflagger
- flagelev.elevation=0deg..20deg
+ flagelev.elevation=$(inputs.flag_elevation)
#
flagamp.amplmin=1e-30
flagamp.type=preflagger
@@ -35,6 +35,9 @@ inputs:
- id: is_raw
type: boolean
default: true
+- id: flag_elevation
+ type: string
+ default: '0deg..20deg'
outputs:
- id: output
--
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