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Commit 0d22f315 authored by Mattia Mancini's avatar Mattia Mancini
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Fix compress step

parent d9a3fc67
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...@@ -5,8 +5,6 @@ cwlVersion: v1.0 ...@@ -5,8 +5,6 @@ cwlVersion: v1.0
inputs: inputs:
- id: directory - id: directory
type: Directory type: Directory
inputBinding:
position: 0
outputs: outputs:
- id: compressed - id: compressed
...@@ -18,11 +16,12 @@ baseCommand: ...@@ -18,11 +16,12 @@ baseCommand:
- 'tar.sh' - 'tar.sh'
doc: 'Untar a compressed file' doc: 'Untar a compressed file'
requirements: requirements:
# InlineJavascriptRequirement: {}
InitialWorkDirRequirement: InitialWorkDirRequirement:
listing: listing:
- entryname: 'tar.sh' - entryname: 'tar.sh'
entry: | entry: |
#!/bin/bash #!/bin/bash
mkdir out mkdir out
dir_name=\$(basename $1) tar -cvf out/$(inputs.directory.basename).tar.gz $(inputs.directory.path)
tar -cvf out/${dir_name}.tar.gz $1
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