first commit

workflow/solarimaging.cwl

@@ -7,19 +7,32 @@ $namespaces:
 inputs:
   - id: calibrator
     type: 'Directory[]'
-    'sbg:x': -408
-    'sbg:y': -48
+    'sbg:x': -498.1015319824219
+    'sbg:y': 156.31472778320312
   - id: sun
     type: 'Directory[]'
-    'sbg:x': -432.8020324707031
-    'sbg:y': 260.9136962890625
+    'sbg:x': -512.3553466796875
+    'sbg:y': 425.75128173828125
+  - id: sky_model
+    'sbg:x': -490.72222900390625
+    'sbg:y': 17.29166603088379
+  - id: sources
+    type: 'string[]'
+    'sbg:x': -511.42132568359375
+    'sbg:y': 304.5245056152344
 outputs:
-  - id: outh5parm
+  - id: image
+    outputSource:
+      - wsclean/image
+    type: File
+    'sbg:x': 1132.7830810546875
+    'sbg:y': 81.57866668701172
+  - id: dirty_image
     outputSource:
-      - h5parm_collector/outh5parm
+      - wsclean/dirty_image
     type: File
-    'sbg:x': 671
-    'sbg:y': 55
+    'sbg:x': 1145.4735107421875
+    'sbg:y': 294.7766418457031
 steps:
   - id: dp3_execute
     in:
@@ -30,6 +43,8 @@ steps:
       - id: steps
         source:
           - flagedge_calibrator/augmented_steps
+      - id: autoweight
+        default: true
     out:
       - id: secondary_output_files
       - id: secondary_output_directories
@@ -47,24 +62,15 @@ steps:
     run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
     'sbg:x': -330
     'sbg:y': -244
-  - id: ddecal
-    in:
-      - id: msin
-        source: predict/msout
-    out:
-      - id: msout
-      - id: h5parm
-    run: ../lofar-cwl/steps/ddecal.cwl
-    scatter:
-      - msin
-    'sbg:x': 312
-    'sbg:y': -82
   - id: predict
     in:
       - id: msin
         source: dp3_execute/msout
       - id: sources_db
         source: make_sourcedb/sourcedb
+      - id: sources
+        source:
+          - sources
     out:
       - id: msout
     run: ../lofar-cwl/steps/predict.cwl
@@ -76,30 +82,32 @@ steps:
     in:
       - id: h5parmFiles
         source:
-          - ddecal/h5parm
+          - gaincal/h5parm
     out:
       - id: outh5parm
       - id: log
     run: ../lofar-cwl/steps/H5ParmCollector.cwl
     label: H5parm_collector
-    'sbg:x': 462
+    'sbg:x': 433
     'sbg:y': -50
   - id: make_sourcedb
-    in: []
+    in:
+      - id: sky_model
+        source: sky_model
     out:
       - id: sourcedb
       - id: log
     run: ../lofar-cwl/steps/makesourcedb.cwl
     label: make_sourcedb_ateam
-    'sbg:x': -74
-    'sbg:y': -304
+    'sbg:x': -15.88888931274414
+    'sbg:y': -298.60888671875
   - id: flagedge_sun
     in: []
     out:
       - id: augmented_steps
     run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
-    'sbg:x': -332.9187927246094
-    'sbg:y': 109.5025405883789
+    'sbg:x': -13.472081184387207
+    'sbg:y': 111.53807067871094
   - id: dp3_execute_1
     in:
       - id: msin
@@ -107,6 +115,8 @@ steps:
       - id: steps
         source:
           - flagedge_sun/augmented_steps
+      - id: autoweight
+        default: true
     out:
       - id: secondary_output_files
       - id: secondary_output_directories
@@ -115,8 +125,52 @@ steps:
     label: DP3.Execute
     scatter:
       - msin
-    'sbg:x': -141.4873046875
-    'sbg:y': 231.12689208984375
+    'sbg:x': 449.2081298828125
+    'sbg:y': 190.84771728515625
+  - id: applycal
+    in:
+      - id: msin
+        source: dp3_execute_1/msout
+      - id: parmdb
+        source: h5parm_collector/outh5parm
+    out:
+      - id: msout
+    run: ../../lofar-cwl/steps/applycal.cwl
+    'sbg:x': 721.1517333984375
+    'sbg:y': 176.82852172851562
+  - id: gaincal
+    in:
+      - id: msin
+        source: predict/msout
+      - id: caltype
+        default: diagonal
+      - id: sourcedb
+        source: make_sourcedb/sourcedb
+      - id: usebeammodel
+        default: true
+      - id: solint
+        default: 4
+      - id: onebeamperpatch
+        default: true
+    out:
+      - id: msout
+      - id: h5parm
+    run: ../../lofar-cwl/steps/gaincal.cwl
+    scatter:
+      - msin
+    'sbg:x': 299
+    'sbg:y': -102
+  - id: wsclean
+    in:
+      - id: msin
+        source: applycal/msout
+    out:
+      - id: dirty_image
+      - id: image
+    run: ../../lofar-cwl/steps/wsclean.cwl
+    label: WSClean
+    'sbg:x': 976.1167602539062
+    'sbg:y': 188.5736083984375
 requirements:
   - class: SubworkflowFeatureRequirement
   - class: ScatterFeatureRequirement