add wide-band flagging step

8 jobs for master in 2 minutes and 12 seconds
Status Job ID Name Coverage
  Validate Cwl Scripts
passed #105247
validate_scripts

00:00:20

 
  Test Steps
passed #105249
blsmooth

00:00:16

failed #105248
allowed to fail
find_skymodel_cal

00:00:21

 
  Integration Test
failed #105251
faraday_rotation

00:00:11

failed #105254
flag_average

00:00:14

failed #105250
pol_align

00:00:51

failed #105252
prefactor_calibrator

00:01:28

failed #105253
toil

00:00:33

 
Name Stage Failure
failed
prefactor_calibrator Integration Test
ERROR [workflow ] Cannot collect workflow output: Workflow contains multiple inbound links to a single parameter but MultipleInputFeatureRequirement is not declared.
INFO [workflow ] completed permanentFail
WARNING Final process status is permanentFail
Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
pol_align Integration Test
ERROR [workflow ] Cannot collect workflow output: Workflow contains multiple inbound links to a single parameter but MultipleInputFeatureRequirement is not declared.
INFO [workflow ] completed permanentFail
WARNING Final process status is permanentFail
Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
toil Integration Test
subworkflow/ndppp_prep_cal.cwl:261:9:   with sink 'baseline' of type "string"
ERROR:root:lofar-cwl/steps/ms_concat.cwl:73:5: Unsupported requirement InplaceUpdateRequirement
INFO:toil.common:Successfully deleted the job store: FileJobStore(/builds/eosc/prefactor3-cwl/jobstore)
Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
flag_average Integration Test
    "msout": null
}
WARNING Final process status is permanentFail
Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
faraday_rotation Integration Test
ERROR Workflow error, try again with --debug for more information:
Invalid job input record:
subworkflow/faraday_rotation.cwl:13:5: Missing required input parameter 'input_h5parm'

Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1
failed
find_skymodel_cal Test Steps
WARNING [job find_skymodel_cal_py] completed permanentFail
{}
WARNING Final process status is permanentFail
Running after_script
Running after script...
$ echo "All done"
All done
Cleaning up file based variables
ERROR: Job failed: exit code 1