Commit f1c741f6 authored by mancini's avatar mancini

Add ionosferic subworkflow

parent 16c60d13
class: Workflow
cwlVersion: v1.0
id: ionosphere
label: ionosphere
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: msin
type: 'Directory[]'
'sbg:x': -590.3988647460938
'sbg:y': -21.5
- id: propagate_solutions
type: boolean
'sbg:x': -482.39886474609375
'sbg:y': -260.5
- id: flagunconverged
type: boolean
'sbg:x': -559.3988647460938
'sbg:y': 118.5
- id: do_smooth
type: boolean
'sbg:x': -420.39886474609375
'sbg:y': 229.5
outputs: []
steps:
- id: smooth_calibrate
in:
- id: msin
source:
- msin
- id: mode
default: diagonal
- id: propagate_solutions
source: propagate_solutions
- id: flagunconverged
source: flagunconverged
- id: do_smooth
source: do_smooth
out:
- id: h5parm
run: ./smooth_calibrate.cwl
label: smooth_calibrate
'sbg:x': -225
'sbg:y': -14
- id: h5parm_collector
in:
- id: h5parmFiles
source:
- smooth_calibrate/h5parm
- id: squeeze
default: true
- id: verbose
default: true
- id: clobber
default: true
out:
- id: outh5parm
- id: log
run: ../lofar-cwl/steps/H5ParmCollector.cwl
label: h5imp_cal_ion
'sbg:x': -42
'sbg:y': -19
requirements:
- class: SubworkflowFeatureRequirement
class: Workflow
cwlVersion: v1.0
id: losoto_ion
label: losoto_ion
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: input_h5parm
type: File
'sbg:x': -588.3988647460938
'sbg:y': -147.5
outputs: []
steps:
- id: losoto_flag
in:
- id: input_h5parm
source: input_h5parm
out:
- id: output_h5parm
run: ../lofar-cwl/steps/LoSoTo.Flag.cwl
'sbg:x': -442.3984375
'sbg:y': -138.5
- id: losoto_flagextend
in:
- id: input_h5parm
source: losoto_flag/output_h5parm
out:
- id: output_h5parm
run: ../lofar-cwl/steps/LoSoTo.Flagextend.cwl
'sbg:x': -255
'sbg:y': -160
- id: losoto_reweight
in:
- id: input_h5parm
source: losoto_flagextend/output_h5parm
out:
- id: output_h5parm
run: ../lofar-cwl/steps/LoSoTo.Reweight.cwl
'sbg:x': 19
'sbg:y': -93
- id: losoto_duplicate
in:
- id: input_h5parm
source: losoto_reweight/output_h5parm
out:
- id: output_h5parm
run: ../lofar-cwl/steps/LoSoTo.Duplicate.cwl
'sbg:x': 241
'sbg:y': -96
- id: losoto_flagstation
in:
- id: input_h5parm
source: losoto_duplicate/output_h5parm
out:
- id: output_h5parm
run: ../lofar-cwl/steps/LoSoTo.FlagStation.cwl
'sbg:x': 579.6011352539062
'sbg:y': -62.5
requirements: []
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