Merge branch 'applycal_step_generator' into 'master'

Add applycal step

See merge request !2
23 jobs for master in 3 minutes and 46 seconds (queued for 2 seconds)
Status Job ID Name Coverage
  Validate Cwl Scripts
passed #4233
validate_scripts

00:00:16

 
  Test Steps
passed #4251
allowed to fail
aoflagger

00:01:27

passed #4236
allowed to fail
aoflagger_step_generator

00:00:23

passed #4235
allowed to fail
applycal_step_generator

00:00:24

passed #4234
allowed to fail
average_step_generator

00:00:27

passed #4253
allowed to fail
ddecal

00:01:00

passed #4249
allowed to fail
DP3.Execute

00:00:25

passed #4247
allowed to fail
file_selector

00:00:21

passed #4254
allowed to fail
gaincal

00:00:41

passed #4250
allowed to fail
h5parm_collector

00:00:22

passed #4252
allowed to fail
interpolate_visibilities

00:00:23

passed #4238
allowed to fail
losoto_abs

00:00:34

passed #4239
allowed to fail
losoto_duplicate

00:00:36

passed #4241
allowed to fail
losoto_norm

00:00:38

passed #4240
allowed to fail
losoto_plot

00:01:56

failed #4245
allowed to fail
losoto_polalign

00:00:20

passed #4242
allowed to fail
losoto_replicateonaxis

00:00:29

passed #4243
allowed to fail
losoto_reset

00:00:28

passed #4244
allowed to fail
losoto_residual

00:00:27

passed #4248
allowed to fail
NDPPP

00:00:25

passed #4246
allowed to fail
parset_selector

00:00:22

passed #4255
allowed to fail
predict

00:00:32

passed #4237
allowed to fail
preflagger_step_generator

00:00:25

 
Name Stage Failure
failed
losoto_polalign Test Steps
$ cwl-runner --no-container steps/LoSoTo.Polalign.cwl test_jobs/losoto_polalign.json
INFO /usr/local/bin/cwl-runner 1.0.20191022103248
INFO Resolved 'steps/LoSoTo.Polalign.cwl' to 'file:///builds/eosc/lofar-cwl/steps/LoSoTo.Polalign.cwl'
ERROR Tool definition failed initialization:
[Errno 2] No such file or directory: '/builds/eosc/lofar-cwl/test_jobs/losoto_polalign.json'

Running after script...
$ echo "All done"
All done
ERROR: Job failed: exit code 1