Commit 968a5ccd authored by mancini's avatar mancini

Add step apply cal

parent 7538528c
Pipeline #419 passed with stages
in 3 minutes and 29 seconds
class: CommandLineTool
cwlVersion: v1.0
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: applycal
baseCommand:
- DPPP
arguments:
- steps=[applycal]
inputs:
- id: msin
type: Directory
inputBinding:
position: 0
prefix: msin=
separate: false
doc: Input Measurement Set
- default: DATA
id: msin_datacolumn
type: string
inputBinding:
position: 0
prefix: msin.datacolumn=
separate: false
doc: Input data Column
- id: parmdb
type: File
doc: Path of parmdb in which the parameters are stored. This can also be an H5Parm file, in that case the filename has to end in '.h5'
inputBinding:
prefix: applycal.parmdb
- id: correction
default: gain
type:
type: enum
symbols:
- gain
- tec
- clock
- rotationangle
- rotation
- scalarphase
- scalaramplitude
- rotationmeasure
- fulljones
doc: |
Type of correction to perform. When using H5Parm, this is for now the name of the soltab; the type will be deduced from the metadata in that soltab, except for full Jones, in which case correction should be 'fulljones'.
inputBinding:
prefix: applycal.correction=
outputs:
- id: msout
doc: Output Measurement Set
type: Directory
outputBinding:
glob: $(inputs.msin.basename)
requirements:
- class: InitialWorkDirRequirement
listing:
- entry: $(inputs.msin)
writable: true
- class: InlineJavascriptRequirement
hints:
- class: DockerRequirement
dockerPull: lofareosc/lofar-pipeline-ci:latest
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