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ResearchAndDevelopment
idg
Commits
c0364077
Commit
c0364077
authored
Jan 08, 2021
by
Bram Veenboer
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Add option to let workers initialize their own input data
parent
ed0c40c6
Changes
1
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1 changed file
with
61 additions
and
14 deletions
+61
-14
idg-bin/examples/cxx/distributed/main.cpp
idg-bin/examples/cxx/distributed/main.cpp
+61
-14
No files found.
idg-bin/examples/cxx/distributed/main.cpp
View file @
c0364077
...
...
@@ -21,6 +21,11 @@
using
namespace
std
;
// Option to let the master distribute input data (uvw coordinates
// and visibilities) to all workers. If set 0, the workers will
// initialize their own data, taking their baseline offset into account.
#define DISTRIBUTE_INPUT 0
// using ProxyType = idg::proxy::cuda::Generic;
using
ProxyType
=
idg
::
proxy
::
cpu
::
Optimized
;
...
...
@@ -138,6 +143,14 @@ void receive_array(int src, T &array) {
MPI_STATUS_IGNORE
);
}
void
send_bytes
(
int
dst
,
void
*
buf
,
size_t
bytes
)
{
MPI_Send
(
buf
,
bytes
,
MPI_BYTE
,
dst
,
0
,
MPI_COMM_WORLD
);
}
void
receive_bytes
(
int
src
,
void
*
buf
,
size_t
bytes
)
{
MPI_Recv
(
buf
,
bytes
,
MPI_BYTE
,
src
,
0
,
MPI_COMM_WORLD
,
MPI_STATUS_IGNORE
);
}
class
MPIRequest
{
public:
...
...
@@ -258,16 +271,8 @@ void run_master(int argc, char *argv[]) {
unsigned
int
nr_baselines
=
(
nr_stations
*
(
nr_stations
-
1
))
/
2
;
// Initialize Data object
idg
::
Data
data
;
// Determine the max baseline length for given grid_size
auto
max_uv
=
data
.
compute_max_uv
(
grid_size
);
// Select only baselines up to max_uv meters long
data
.
limit_max_baseline_length
(
max_uv
);
// Restrict the number of baselines to nr_baselines
data
.
limit_nr_baselines
(
nr_baselines
);
idg
::
Data
data
=
idg
::
get_example_data
(
nr_baselines
,
grid_size
,
integration_time
);
// Print data info
data
.
print_info
();
...
...
@@ -293,9 +298,11 @@ void run_master(int argc, char *argv[]) {
// Distribute parameters
for
(
int
dst
=
0
;
dst
<
world_size
;
dst
++
)
{
send_int
(
dst
,
nr_stations
);
send_int
(
dst
,
nr_baselines
);
send_int
(
dst
,
nr_baselines_per_worker
);
send_int
(
dst
,
nr_timesteps
);
send_int
(
dst
,
nr_timeslots
);
send_float
(
dst
,
integration_time
);
send_int
(
dst
,
nr_channels
);
send_int
(
dst
,
nr_correlations
);
send_int
(
dst
,
nr_w_layers
);
...
...
@@ -316,6 +323,13 @@ void run_master(int argc, char *argv[]) {
send_array
(
dst
,
frequencies
);
}
// Distribute data
#if !DISTRIBUTE_INPUT
for
(
int
dst
=
1
;
dst
<
world_size
;
dst
++
)
{
send_bytes
(
dst
,
&
data
,
sizeof
(
data
));
}
#endif
// Initialize proxy
ProxyType
proxy
;
...
...
@@ -338,10 +352,15 @@ void run_master(int argc, char *argv[]) {
omp_set_nested
(
true
);
// Input buffers for all workers
#if DISTRIBUTE_INPUT
idg
::
Array2D
<
idg
::
UVW
<
float
>>
uvw_all
(
nr_baselines
,
nr_timesteps
);
idg
::
Array3D
<
idg
::
Visibility
<
std
::
complex
<
float
>>>
visibilities_all
=
idg
::
get_dummy_visibilities
(
nr_baselines
,
nr_timesteps
,
nr_channels
);
idg
::
get_dummy_visibilities
(
nr_baselines
,
nr_timesteps
,
nr_channels
);
#else
idg
::
Array2D
<
idg
::
UVW
<
float
>>
uvw
(
nr_baselines_master
,
nr_timesteps
);
idg
::
Array3D
<
idg
::
Visibility
<
std
::
complex
<
float
>>>
visibilities
=
idg
::
get_dummy_visibilities
(
nr_baselines_master
,
nr_timesteps
,
nr_channels
);
#endif
int
time_offset
=
0
;
// Set grid
...
...
@@ -354,6 +373,7 @@ void run_master(int argc, char *argv[]) {
// Iterate all cycles
for
(
unsigned
cycle
=
0
;
cycle
<
nr_cycles
;
cycle
++
)
{
#if DISTRIBUTE_INPUT
// Get UVW coordinates for current cycle
data
.
get_uvw
(
uvw_all
,
0
,
time_offset
,
integration_time
);
...
...
@@ -386,6 +406,11 @@ void run_master(int argc, char *argv[]) {
// Get master buffers
idg
::
Array2D
<
idg
::
UVW
<
float
>>
uvw
(
uvw_all
.
data
(
nr_baselines_all_workers
,
0
),
nr_baselines_master
,
nr_timesteps
);
idg
::
Array3D
<
idg
::
Visibility
<
std
::
complex
<
float
>>>
visibilities
(
visibilities_all
.
data
(
nr_baselines_all_workers
,
0
,
0
),
nr_baselines_master
,
nr_timesteps
,
nr_channels
);
#else
// Get UVW coordinates for current cycle
data
.
get_uvw
(
uvw
,
nr_baselines_all_workers
,
time_offset
,
integration_time
);
#endif
idg
::
Array1D
<
std
::
pair
<
unsigned
int
,
unsigned
int
>>
baselines
(
baselines_all
.
data
(
nr_baselines_all_workers
),
nr_baselines_master
);
// Create plan
...
...
@@ -452,7 +477,7 @@ void run_master(int argc, char *argv[]) {
std
::
cout
<<
std
::
scientific
;
// Report input
double
input_bw
=
bytes_input
/
runtime_input
*
1e-9
;
double
input_bw
=
bytes_input
?
bytes_input
/
runtime_input
*
1e-9
:
0
;
std
::
stringstream
report_input
;
report_input
<<
"input: "
<<
runtime_input
<<
" s , "
<<
input_bw
<<
" GB/s"
;
...
...
@@ -488,11 +513,17 @@ void run_worker() {
int
rank
;
MPI_Comm_rank
(
MPI_COMM_WORLD
,
&
rank
);
// Get the number of processes
int
world_size
;
MPI_Comm_size
(
MPI_COMM_WORLD
,
&
world_size
);
// Receive parameters
unsigned
int
nr_stations
=
receive_int
();
unsigned
int
total_nr_baselines
=
receive_int
();
unsigned
int
nr_baselines
=
receive_int
();
unsigned
int
nr_timesteps
=
receive_int
();
unsigned
int
nr_timeslots
=
receive_int
();
float
integration_time
=
receive_float
();
unsigned
int
nr_channels
=
receive_int
();
unsigned
int
nr_correlations
=
receive_int
();
unsigned
int
nr_w_layers
=
receive_int
();
...
...
@@ -525,20 +556,33 @@ void run_worker() {
idg
::
Array1D
<
float
>
frequencies
=
proxy
.
allocate_array1d
<
float
>
(
nr_channels
);
receive_array
(
0
,
frequencies
);
// Receive data
idg
::
Data
data
=
idg
::
get_example_data
(
total_nr_baselines
,
grid_size
,
integration_time
);
// Plan options
idg
::
Plan
::
Options
options
=
get_plan_options
();
omp_set_nested
(
true
);
// Buffers for input data
idg
::
Array2D
<
idg
::
UVW
<
float
>>
uvw
(
nr_baselines
,
nr_timesteps
);
#if DISTRIBUTE_INPUT
idg
::
Array3D
<
idg
::
Visibility
<
std
::
complex
<
float
>>>
visibilities
(
nr_baselines
,
nr_timesteps
,
nr_channels
);
#else
idg
::
Array3D
<
idg
::
Visibility
<
std
::
complex
<
float
>>>
visibilities
=
idg
::
get_dummy_visibilities
(
nr_baselines
,
nr_timesteps
,
nr_channels
);
int
time_offset
=
0
;
int
bl_offset
=
(
rank
-
1
)
*
nr_baselines
;
#endif
// Set grid
proxy
.
set_grid
(
grid
);
// Iterate all cycles
for
(
unsigned
cycle
=
0
;
cycle
<
nr_cycles
;
cycle
++
)
{
#if DISTRIBUTE_INPUT
// Receive input data
MPIRequestList
requests
;
for
(
unsigned
bl
=
0
;
bl
<
nr_baselines
;
bl
++
)
{
...
...
@@ -553,8 +597,11 @@ void run_worker() {
size_t
sizeof_uvw
=
nr_timesteps
*
sizeof
(
idg
::
UVW
<
float
>
);
requests
.
create
()
->
receive
(
uvw_ptr
,
sizeof_uvw
,
0
);
}
requests
.
wait
();
#else
// Get UVW coordinates for current cycle
data
.
get_uvw
(
uvw
,
bl_offset
,
time_offset
,
integration_time
);
#endif
// Create plan
auto
plan
=
std
::
unique_ptr
<
idg
::
Plan
>
(
new
idg
::
Plan
(
...
...
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