class: Workflow
cwlVersion: v1.0
id: pa
label: PA
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: flagunconverged
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': -300
- id: propagatesolutions
type: boolean?
default: true
'sbg:x': -1000
'sbg:y': -200
- id: msin
type: 'Directory[]'
'sbg:x': -1000
'sbg:y': -100
- id: h5parm
type: File
'sbg:x': -1000
'sbg:y': 0
- id: refant
type: string?
'sbg:x': -1000
'sbg:y': 100
- id: inh5parm_logfile
type: File
'sbg:x': -1000
'sbg:y': 200
- id: do_smooth
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': 300
outputs:
- id: outh5parm
outputSource:
- h5parm_collector/outh5parm
type: File
'sbg:x': 1000
'sbg:y': -200
- id: msout
outputSource:
- apply_calibrate_pa/msout
type: 'Directory[]'
'sbg:x': 1000
'sbg:y': -100
- id: inspection
outputSource:
- losoto_plot_P3/output_plots
- losoto_plot_Pd/output_plots
- losoto_plot_Rot3/output_plots
- losoto_plot_A3/output_plots
- losoto_plot_Align/output_plots
- losoto_plot_Pr/output_plots
- losoto_plot_Pr2/output_plots
type: 'File[]'
linkMerge: merge_flattened
'sbg:x': 1000
'sbg:y': 0
- id: solutions
outputSource:
- write_solutions/outh5parm
type: File
'sbg:x': 1000
'sbg:y': 100
- id: logfiles
outputSource:
- concat_logfiles_pa/output
- concat_logfiles_calib/output
- concat_logfiles_blsmooth/output
- concat_logfiles_beam/output
- concat_logfiles_apply/output
type: 'File[]'
linkMerge: merge_flattened
'sbg:x': 1000
'sbg:y': 200
- id: outh5parm_logfile
outputSource:
- h5parm_collector/log
type: File
'sbg:x': 1000
'sbg:y': 300
steps:
- id: pol_align
in:
- id: refAnt
default: CS001HBA0
source: refant
- id: input_h5parm
source: h5parm
out:
- id: output_h5parm
- id: logfiles
run: ../../subworkflow/pol_align.cwl
label: PolAlign
'sbg:x': -500
'sbg:y': 0
- id: losoto_plot_P3
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/phaseOrig
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: minmax
default:
- -3.14
- 3.14
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign_ph_
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_P3
'sbg:x': 0
'sbg:y': -200
- id: losoto_plot_Pd
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/phaseOrig
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: axisDiff
default: pol
- id: minmax
default:
- -3.14
- 3.14
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign_ph_poldif
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_Pd
'sbg:x': 0
'sbg:y': -100
- id: losoto_plot_Rot3
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/rotation000
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign_rotangle
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_Rot3
'sbg:x': 0
'sbg:y': 0
- id: losoto_plot_A3
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/amplitude000
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: plotFlag
default: true
- id: prefix
default: polalign_amp
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_A3
'sbg:x': 0
'sbg:y': 100
- id: losoto_plot_Align
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/polalign
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: axisDiff
default: pol
- id: minmax
default:
- -3.14
- 3.14
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_Align
'sbg:x': 0
'sbg:y': 200
- id: losoto_plot_Pr
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/phase000
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: axisDiff
default: pol
- id: minmax
default:
- -3.14
- 3.14
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign_ph-res_poldif
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_Pr
'sbg:x': 0
'sbg:y': 300
- id: losoto_plot_Pr2
in:
- id: input_h5parm
source: pol_align/output_h5parm
- id: soltab
default: sol000/phase000
- id: axesInPlot
default:
- time
- freq
- id: axisInTable
default: ant
- id: axisInCol
default: pol
- id: minmax
default:
- -3.14
- 3.14
- id: plotFlag
default: true
- id: refAnt
source: refant
- id: prefix
default: polalign_ph-res_
out:
- id: output_plots
- id: logfile
run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl
label: losoto_plot_Pr2
'sbg:x': 0
'sbg:y': 400
- id: concat_logfiles_pa
in:
- id: file_list
linkMerge: merge_flattened
source:
- inh5parm_logfile
- pol_align/logfiles
- losoto_plot_P3/logfile
- losoto_plot_Pd/logfile
- losoto_plot_Rot3/logfile
- losoto_plot_A3/logfile
- losoto_plot_Align/logfile
- losoto_plot_Pr/logfile
- losoto_plot_Pr2/logfile
- write_solutions/log
- id: file_prefix
default: losoto_PA
out:
- id: output
run: ../../steps/concatenate_files.cwl
label: concat_logfiles_PA
'sbg:x': 500
'sbg:y': 500
- id: write_solutions
in:
- id: h5parmFiles
source: pol_align/output_h5parm
- id: outsolset
default: calibrator
- id: insoltab
default: polalign
- id: outh5parmname
default: cal_solutions.h5
- id: squeeze
default: true
- id: verbose
default: true
out:
- id: outh5parm
- id: log
run: ../../steps/h5parmcat.cwl
label: write_solutions
'sbg:x': 0
'sbg:y': 500
- id: apply_calibrate_pa
in:
- id: msin
source: msin
- id: do_smooth
source: do_smooth
- id: flagunconverged
source: flagunconverged
- id: propagatesolutions
source: propagatesolutions
- id: input_h5parm
source: write_solutions/outh5parm
out:
- id: msout
- id: BLsmooth.log
- id: apply_cal.log
- id: calib_cal.log
- id: outh5parm
- id: applybeam.log
run: ../../subworkflow/apply_calibrate_pa.cwl
label: apply_calibrate_pa
scatter:
- msin
'sbg:x': 500
'sbg:y': 0
- id: concat_logfiles_blsmooth
in:
- id: file_list
source:
- apply_calibrate_pa/BLsmooth.log
- id: file_prefix
default: blsmooth_PA
out:
- id: output
run: ../../steps/concatenate_files.cwl
label: concat_logfiles_blsmooth
'sbg:x': 750
'sbg:y': 300
- id: concat_logfiles_beam
in:
- id: file_list
source:
- apply_calibrate_pa/applybeam.log
- id: file_prefix
default: applybeam_PA
out:
- id: output
run: ../../steps/concatenate_files.cwl
label: concat_logfiles_beam
'sbg:x': 750
'sbg:y': 400
- id: concat_logfiles_apply
in:
- id: file_list
source:
- apply_calibrate_pa/apply_cal.log
- id: file_prefix
default: apply_cal_PA
out:
- id: output
run: ../../steps/concatenate_files.cwl
label: concat_logfiles_apply
'sbg:x': 750
'sbg:y': 600
- id: concat_logfiles_calib
in:
- id: file_list
source:
- apply_calibrate_pa/calib_cal.log
- id: file_prefix
default: calib_cal_PA
out:
- id: output
run: ../../steps/concatenate_files.cwl
label: concat_logfiles_calib
'sbg:x': 750
'sbg:y': 800
- id: h5parm_collector
in:
- id: h5parmFiles
source:
- apply_calibrate_pa/outh5parm
- id: squeeze
default: true
- id: verbose
default: true
- id: clobber
default: true
out:
- id: outh5parm
- id: log
run: ../../lofar-cwl/steps/H5ParmCollector.cwl
label: H5parm_collector
'sbg:x': 750
'sbg:y': -300
requirements:
- class: SubworkflowFeatureRequirement
- class: ScatterFeatureRequirement
- class: MultipleInputFeatureRequirement