class: Workflow
cwlVersion: v1.0
id: _h_b_a
label: HBA.cwl
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: msin
type: 'Directory[]'
'sbg:x': -1000
'sbg:y': -1700
- id: refant
type: string?
default: CS001HBA0
'sbg:x': -1000
'sbg:y': -1600
- id: flag_baselines
type: 'string[]?'
default: []
'sbg:x': -1000
'sbg:y': -1500
- id: process_baselines_cal
type: string?
default: '*&'
'sbg:x': -1000
'sbg:y': -1400
- id: filter_baselines
type: string?
default: '*&'
'sbg:x': -1000
'sbg:y': -1300
- id: do_smooth
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': -1200
- id: rfistrategy
type: string?
default: HBAdefault.rfis
'sbg:x': -1000
'sbg:y': -1100
- id: max2interpolate
type: int?
default: 30
'sbg:x': -1000
'sbg:y': -1000
- id: ampRange
type: 'int[]?'
default:
- 0
- 0
'sbg:x': -1000
'sbg:y': -900
- id: skip_international
type: boolean?
default: true
'sbg:x': -1000
'sbg:y': -800
- id: raw_data
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': -700
- id: propagatesolutions
type: boolean?
default: true
'sbg:x': -1000
'sbg:y': -600
- id: flagunconverged
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': -500
- id: maxStddev
type: float?
default: -1.0
'sbg:x': -1000
'sbg:y': -400
- id: solutions2transfer
type: File?
default: /data/solutions/3C48.h5
'sbg:x': -1000
'sbg:y': -300
- id: antennas2transfer
type: File?
default: '[FUSPID].*'
'sbg:x': -1000
'sbg:y': -200
- id: demix_sources
type: 'string[]?'
default:
- CasA
- CygA
'sbg:x': -1000
'sbg:y': -100
- id: demix_target
type: string?
default: ''
'sbg:x': -1000
'sbg:y': 0
- id: demix_freqstep
type: int?
default: 16
'sbg:x': -1000
'sbg:y': 100
- id: demix_timestep
type: int?
default: 10
'sbg:x': -1000
'sbg:y': 200
- id: demix
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': 300
- id: ion_3rd
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': 400
- id: clock_smooth
type: boolean?
default: true
'sbg:x': -1000
'sbg:y': 500
- id: tables2export
type: string?
default: clock
'sbg:x': -1000
'sbg:y': 600
- id: final_apply
type: boolean?
default: false
'sbg:x': -1000
'sbg:y': 700
- id: memoryperc
type: int?
default: 20
'sbg:x': -1000
'sbg:y': 800
- id: min_length
type: int?
default: 50
'sbg:x': -1000
'sbg:y': 900
- id: overhead
type: float?
default: 0.8
'sbg:x': -1000
'sbg:y': 1000
- id: min_separation
type: int?
default: 30
'sbg:x': -1000
'sbg:y': 1100
- id: max_separation_arcmin
type: float?
default: 1
'sbg:x': -1000
'sbg:y': 1200
- id: calibrator_path_skymodel
type: Directory?
default: /data/skymodels
'sbg:x': -1000
'sbg:y': 1300
- id: A-Team_sky_model
type: File?
default: /data/skymodels/Ateam_LBA_CC.skymodel
'sbg:x': -1000
'sbg:y': 1400
- id: cal_solutions
type: string?
default: cal_solutions.h5
'sbg:x': -1000
'sbg:y': 1500
- id: avg_timeresolution
type: float?
default: 4
'sbg:x': -1000
'sbg:y': 1600
- id: avg_freqresolution
type: string?
default: 48.82kHz
'sbg:x': -1000
'sbg:y': 1700
- id: bandpass_freqresolution
type: string?
default: 195.3125kHz
'sbg:x': -1000
'sbg:y': 1800
outputs:
- id: msout
outputSource:
- prefactor/msout
type: 'Directory[]'
'sbg:x': 1000
'sbg:y': -200
- id: make_sourcedb_ateam.log
outputSource:
- prefactor/make_sourcedb_ateam.log
type: File?
'sbg:x': 1000
'sbg:y': -100
- id: logfile_prep_cal
outputSource:
- prefactor/logfile_prep_cal
type: 'File[]?'
'sbg:x': 1000
'sbg:y': 0
- id: check_Ateam_separation.png
outputSource:
- prefactor/check_Ateam_separation.png
type: 'File[]?'
'sbg:x': 1000
'sbg:y': 100
- id: check_Ateam_separation.log
outputSource:
- prefactor/check_Ateam_separation.log
type: 'File[]?'
'sbg:x': 1000
'sbg:y': 200
- id: parset
outputSource:
- prefactor/parset
type: 'File[]'
'sbg:x': 1000
'sbg:y': 300
steps:
- id: prefactor
in:
- id: msin
source: msin
- id: refant
source: refant
- id: flag_baselines
source: flag_baselines
- id: process_baselines_cal
source: process_baselines_cal
- id: filter_baselines
source: filter_baselines
- id: do_smooth
source: do_smooth
- id: rfistrategy
source: rfistrategy
- id: max2interpolate
source: max2interpolate
- id: ampRange
source: ampRange
- id: skip_international
source: skip_international
- id: raw_data
source: raw_data
- id: propagatesolutions
source: propagatesolutions
- id: flagunconverged
source: flagunconverged
- id: maxStddev
source: maxStddev
- id: solutions2transfer
source: solutions2transfer
- id: antennas2transfer
source: antennas2transfer
- id: demix_sources
source: demix_sources
- id: demix_target
source: demix_target
- id: demix_freqstep
source: demix_freqstep
- id: demix_timestep
source: demix_timestep
- id: demix
source: demix
- id: ion_3rd
source: ion_3rd
- id: clock_smooth
source: clock_smooth
- id: tables2export
source: tables2export
- id: final_apply
source: final_apply
- id: memoryperc
source: memoryperc
- id: min_length
source: min_length
- id: overhead
source: overhead
- id: min_separation
source: min_separation
- id: max_separation_arcmin
source: max_separation_arcmin
- id: calibrator_path_skymodel
source: calibrator_path_skymodel
- id: A-Team_sky_model
source: Team_sky_model
- id: cal_solutions
source: cal_solutions
- id: avg_timeresolution
source: avg_timeresolution
- id: avg_freqresolution
source: avg_freqresolution
- id: bandpass_freqresolution
source: bandpass_freqresolution
out:
- id: check_Ateam_separation.png
- id: check_Ateam_separation.log
- id: make_sourcedb_ateam.log
- id: msout
- id: logfile_prep_cal
- id: parset
run: ./prefactor_calibrator.cwl
label: prefactor_calibrator
'sbg:x': 0
'sbg:y': 0
requirements:
- class: SubworkflowFeatureRequirement