From f9edc72b53299923a1bfcaf30b6b9d0965e344b2 Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Mon, 21 Oct 2019 12:23:22 +0200
Subject: [PATCH] Add interpolate visibilities
Former-commit-id: 7ee040058280a52c8468d4a18d8e65b526352b78
---
.gitlab-ci.yml | 1 +
steps/interpolate_visibilities.cwl | 50 +++++++++++++++++++++++++
test_jobs/interpolate_visibilities.json | 4 ++
3 files changed, 55 insertions(+)
create mode 100644 steps/interpolate_visibilities.cwl
create mode 100644 test_jobs/interpolate_visibilities.json
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6a08221a..4449bc2f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -38,3 +38,4 @@ test_DPPP_step:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH steps/DPPP.cwl test_jobs/NDPPP.json
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH steps/AOFlagger.cwl test_jobs/aoflagger.json
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH steps/find_skymodel_cal.cwl test_jobs/find_skymodel_cal.json
+ - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH steps/interpolate_visibilities.cwl test_jobs/interpolate_visibilities.json
diff --git a/steps/interpolate_visibilities.cwl b/steps/interpolate_visibilities.cwl
new file mode 100644
index 00000000..43580a1e
--- /dev/null
+++ b/steps/interpolate_visibilities.cwl
@@ -0,0 +1,50 @@
+class: CommandLineTool
+cwlVersion: v1.0
+$namespaces:
+ sbg: 'https://www.sevenbridges.com/'
+id: interpolate_visibilities
+baseCommand:
+ - DPPP
+arguments:
+ - -msout.datacolumn=INTERP_DATA
+ - -msin.datacolumn=DATA
+ - steps=[interpolate]
+inputs:
+ - id: msin
+ type: Directory
+ inputBinding:
+ prefix: '-msin='
+ separate: false
+ - id: msout_name
+ default: out.MS
+ type: string
+ inputBinding:
+ prefix: '-msout='
+ separate: false
+ - id: storage_manager
+ type: string
+ default: Dysco
+ inputBinding:
+ separate: false
+ prefix: '-msout.storagemanager='
+ - id: storage_manager_databitrate
+ type: int
+ default: 0
+ inputBinding:
+ prefix: '-msout.storagemanager.databitrate='
+ separate: false
+ - id: window_size
+ type: int
+ inputBinding:
+ prefix: '-interpolate.windowsize='
+ separate: false
+
+outputs:
+ - id: msout
+ type: Directory
+ outputBinding:
+ glob: $(inputs.msout_name)
+label: interpolate_visibilities
+requirements:
+ - class: DockerRequirement
+ dockerPull: lofar/lofar-pipeline
diff --git a/test_jobs/interpolate_visibilities.json b/test_jobs/interpolate_visibilities.json
new file mode 100644
index 00000000..8ed20fe1
--- /dev/null
+++ b/test_jobs/interpolate_visibilities.json
@@ -0,0 +1,4 @@
+{
+ "msin": { "class":"Directory", "/data/L570745_SB000_uv_first10.MS"},
+ "window_size": 5
+}
--
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