From f6ec1a6730ea1de947e5400a32aada32d95ee5df Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Fri, 8 Nov 2019 18:54:33 +0100
Subject: [PATCH] Add LoSoTo reset
---
.gitlab-ci.yml | 6 +++++
steps/LoSoTo.Reset.cwl | 49 +++++++++++++++++++++++++++++++++++++
test_jobs/losoto_reset.json | 7 ++++++
3 files changed, 62 insertions(+)
create mode 100644 steps/LoSoTo.Reset.cwl
create mode 100644 test_jobs/losoto_reset.json
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 79e85731..345f3cae 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -59,6 +59,12 @@ losoto_norm:
script:
- cwl-runner --no-container steps/LoSoTo.Norm.cwl test_jobs/losoto_norm.json
+losoto_reset:
+ stage: test_steps
+ allow_failure: true
+ script:
+ - cwl-runner --no-container steps/LoSoTo.Reset.cwl test_jobs/losoto_reset.json
+
parset_selector:
stage: test_steps
diff --git a/steps/LoSoTo.Reset.cwl b/steps/LoSoTo.Reset.cwl
new file mode 100644
index 00000000..149587c9
--- /dev/null
+++ b/steps/LoSoTo.Reset.cwl
@@ -0,0 +1,49 @@
+#!/usr/bin/env cwl-runner
+
+class: CommandLineTool
+cwlVersion: v1.0
+id: losoto_reset
+
+doc: Subtract/divide two tables or a clock/tec/tec3rd/rm from a phase.
+
+requirements:
+ InlineJavascriptRequirement: {}
+ InitialWorkDirRequirement:
+ listing:
+ - entryname: 'parset.config'
+ entry: |
+ [reset]
+ soltab = $(inputs.soltab)
+ operation = RESET
+ $(inputs.dataVal !== null? 'dataVal=' + inputs.dataVal: '')
+
+ - entryname: $(inputs.input_h5parm.basename)
+ entry: $(inputs.input_h5parm)
+ writable: true
+
+baseCommand: "losoto"
+
+arguments:
+ - $(inputs.input_h5parm.basename)
+ - parset.config
+
+hints:
+ DockerRequirement:
+ dockerPull: lofareosc/prefactor-ci:master
+
+inputs:
+ - id: input_h5parm
+ type: File
+ - id: soltab
+ type: string
+ doc: "Solution table"
+ - id: dataVal
+ type: float?
+ doc: |
+ If given set values to this number, otherwise uses 1 for amplitude and 0
+ for all other soltab types.
+outputs:
+ - id: output_h5parm
+ type: File
+ outputBinding:
+ glob: $(inputs.input_h5parm.basename)
diff --git a/test_jobs/losoto_reset.json b/test_jobs/losoto_reset.json
new file mode 100644
index 00000000..ff1cfa0f
--- /dev/null
+++ b/test_jobs/losoto_reset.json
@@ -0,0 +1,7 @@
+{
+ "input_h5parm": {
+ "class": "File",
+ "path": "/data/example.h5"
+ },
+ "soltab": "sol000/amplitude000"
+}
--
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