From d1c4b85c63144c0b87aa3513be788badad508714 Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Wed, 25 Sep 2019 13:22:53 +0200
Subject: [PATCH] setting up valid GenericParsetGenerator step
---
steps/GenericParsetGeneratorStep.cwl | 33 ++++++++++++++++++----------
1 file changed, 21 insertions(+), 12 deletions(-)
diff --git a/steps/GenericParsetGeneratorStep.cwl b/steps/GenericParsetGeneratorStep.cwl
index fc7ce6da..33f0be7d 100644
--- a/steps/GenericParsetGeneratorStep.cwl
+++ b/steps/GenericParsetGeneratorStep.cwl
@@ -1,22 +1,31 @@
class: CommandLineTool
cwlVersion: v1.0
-id: GenericParsetGeneratorStep
-baseCommand: [python, -c, 'import sys; print(sys.argv)']
-
+$namespaces:
+ sbg: 'https://www.sevenbridges.com/'
+id: _generic_parset_generator_step
+baseCommand:
+ - python
+ - -c
+ - "import sys; print(sys.argv[1:])"
inputs:
- id: step_name
type: string
- doc: "name of the DPPP step"
-
+ inputBinding:
+ position: 1
+ doc: name of the DPPP step
- id: step_type
type: string
- doc: "type of the DPPP step"
-
+ inputBinding:
+ position: 2
+ doc: type of the DPPP step
- id: step_arguments
- type: array<string>
- doc: "List of key=value parameters to pass"
+ type: 'string[]'
+ inputBinding:
+ position: 3
+ doc: List of key=value parameters to pass
outputs:
- - id: output_file
- type: File
- doc: "Parset output file"
+ output_file:
+ doc: Parset output file
+ type: stdout
+
--
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