diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index ba19298f22d748c4f3132d499f3893ded92a68f4..c25f065a2f8938021b67eb76efd040d4f42a5ec8 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -109,6 +109,12 @@ losoto_reset: script: - cwl-runner --no-container steps/LoSoTo.Reset.cwl test_jobs/losoto_reset.json +losoto_structure: + stage: test_steps + allow_failure: true + script: + - cwl-runner --no-container steps/LoSoTo.Structure.cwl test_jobs/losoto_structure.json + losoto_smooth: stage: test_steps allow_failure: true diff --git a/steps/LoSoTo.Structure.cwl b/steps/LoSoTo.Structure.cwl new file mode 100644 index 0000000000000000000000000000000000000000..cdf29c2f61d88dfad58c78ed5c5ada0993ccb121 --- /dev/null +++ b/steps/LoSoTo.Structure.cwl @@ -0,0 +1,62 @@ +#!/usr/bin/env cwl-runner + +class: CommandLineTool +cwlVersion: v1.0 +id: losoto_structure + +$namespaces: + lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl +doc: | + Find the structure function from phase solutions of core stations. + WEIGHT: compliant + + +requirements: + InlineJavascriptRequirement: + expressionLib: + - { $include: utils.js} + InitialWorkDirRequirement: + listing: + - entryname: 'parset.config' + entry: $(get_losoto_config('STRUCTURE').join('\n')) + + - entryname: $(inputs.input_h5parm.basename) + entry: $(inputs.input_h5parm) + writable: true + +baseCommand: "losoto" + +arguments: + - $(inputs.input_h5parm.basename) + - parset.config + +hints: + DockerRequirement: + dockerPull: lofareosc/lofar-pipeline-ci:latest + +inputs: + - id: input_h5parm + type: File + format: lofar:#H5Parm + - id: soltab + type: string + doc: "Solution table" + - id: doUnwrap + type: boolean? + - id: refAnt + type: string? + doc: Reference antenna, by default the first. + - id: plotName + type: string? + doc: Plot file name, by default no plot. + - id: ndiv + type: int? + +outputs: + - id: output_h5parm + type: File + format: lofar:#H5Parm + outputBinding: + glob: $(inputs.input_h5parm.basename) +$schema: + - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl diff --git a/test_jobs/losoto_structure.json b/test_jobs/losoto_structure.json new file mode 100644 index 0000000000000000000000000000000000000000..6f4f9bc6456e05248f43cc12434c261da2a3f3fb --- /dev/null +++ b/test_jobs/losoto_structure.json @@ -0,0 +1,4 @@ +{ + "input_h5parm": {"class": "File", "path": "/data/example.h5", "format": "lofar:#H5Parm"}, + "soltab": "sol000/phase000", +}