diff --git a/lofar-cwl/steps/ms_concat.cwl b/lofar-cwl/steps/ms_concat.cwl index 8258e62a9b9d49f77cf704f33033a8bff0de8f22..93228fb0af80197b13e6f05ad3afda1a8845dea8 100644 --- a/lofar-cwl/steps/ms_concat.cwl +++ b/lofar-cwl/steps/ms_concat.cwl @@ -64,13 +64,13 @@ requirements: - entry: $(inputs.msin) writable: true - entryname: script.sh - entry: | + entry: | #!/bin/bash directories=\$(ls -d out_*) #echo \$directories mkdir -pv workdir cp -r \$directories workdir/. && cd workdir - python3 /usr/local/bin/concat_MS_CWL.py \$1 \$2 \$3 \$4 \$directories \$5 + concat_MS_CWL.py \$1 \$2 \$3 \$4 \$directories \$5 - class: InplaceUpdateRequirement inplaceUpdate: true - class: InlineJavascriptRequirement @@ -78,15 +78,15 @@ stdout: ms_concat.log -# +# # mkdir -pv dirs && cp -rv \$directories dirs/. && cd dirs # directories=\$(ls -d out_*) -# +# #- entryname: script.sh # entry: | # #!/bin/bash - # + # # ls #- python3 diff --git a/workflows/prefactor_calibrator/ion.cwl b/workflows/prefactor_calibrator/ion.cwl index d38478bcd69d93cfdd9bb891f4993a6d8dd19131..956b322cbbc173376e2e427c4fc504298d49f4b8 100644 --- a/workflows/prefactor_calibrator/ion.cwl +++ b/workflows/prefactor_calibrator/ion.cwl @@ -76,7 +76,6 @@ outputs: - id: inspection outputSource: - losoto_plot_P3/output_plots - - losoto_plot_Pd/output_plots - losoto_plot_tec/output_plots - losoto_plot_tec3rd/output_plots - losoto_plot_clock/output_plots @@ -148,38 +147,6 @@ steps: label: losoto_plot_P3 'sbg:x': 0 'sbg:y': -200 - - id: losoto_plot_Pd - in: - - id: input_h5parm - source: clocktec/output_h5parm - - id: soltab - default: sol000/phaseOrig - - id: axesInPlot - default: - - time - - freq - - id: axisInTable - default: ant - - id: axisDiff - default: pol - - id: minmax - default: - - -3.14 - - 3.14 - - id: plotFlag - default: true - - id: refAnt - source: refant - - id: prefix - default: ion_ph_poldif - out: - - id: output_plots - - id: logfile - - id: parset - run: ../../lofar-cwl/steps/LoSoTo.Plot.cwl - label: losoto_plot_Pd - 'sbg:x': 0 - 'sbg:y': -100 - id: losoto_plot_tec in: - id: input_h5parm @@ -324,7 +291,6 @@ steps: - inh5parm_logfile - clocktec/logfiles - losoto_plot_P3/logfile - - losoto_plot_Pd/logfile - losoto_plot_tec/logfile - losoto_plot_tec3rd/logfile - losoto_plot_clock/logfile