diff --git a/steps/ddecal.cwl b/steps/ddecal.cwl index 454afeea330e8f457fccbc484cd4fb838bc33ce4..7e4f0b83bca59f80edd741ac71d87d428220054a 100644 --- a/steps/ddecal.cwl +++ b/steps/ddecal.cwl @@ -35,14 +35,6 @@ inputs: prefix: msin.datacolumn= separate: false - - id: msin_modelcolum - type: string? - default: MODEL_DATA - doc: Model data Column - inputBinding: - prefix: msin.modelcolumn= - separate: false - - id: output_name_h5parm type: string? default: instrument.h5 @@ -68,11 +60,14 @@ inputs: default: true inputBinding: prefix: ddecal.propagateconvergedonly=True - - id: usemodelcolumn - type: boolean? - default: true + - id: modeldatacolumns + type: string[]? + default: [] inputBinding: - prefix: ddecal.usemodelcolumn=True + prefix: ddecal.modeldatacolumns= + separate: false + valueFrom: "[$(self.join(','))]" + shellQuote: false - id: flagunconverged type: boolean? default: false diff --git a/workflows/HBA_calibrator.cwl b/workflows/HBA_calibrator.cwl index 602e998c1fd99309076e371de519bc46b1e0d828..a989afee9020897ed28208641c13e2405b156000 100644 --- a/workflows/HBA_calibrator.cwl +++ b/workflows/HBA_calibrator.cwl @@ -88,9 +88,6 @@ inputs: - id: tables2export type: string? default: clock - - id: final_apply - type: boolean? - default: false - id: max_dppp_threads type: int? default: 10 @@ -200,8 +197,6 @@ steps: source: clock_smooth - id: tables2export source: tables2export - - id: final_apply - source: final_apply - id: max_dppp_threads source: max_dppp_threads - id: memoryperc diff --git a/workflows/HBA_target.cwl b/workflows/HBA_target.cwl index bf2ea2df733bd4579461cdb18b640fa308b177c7..f9a5507223d58a904a5f56e36b46bdc65fa80aa7 100644 --- a/workflows/HBA_target.cwl +++ b/workflows/HBA_target.cwl @@ -276,6 +276,8 @@ steps: source: clip_sources - id: ncores source: ncores + - id: gsmcal_step + source: gsmcal_step out: - id: logfiles - id: msout diff --git a/workflows/LBA_calibrator.cwl b/workflows/LBA_calibrator.cwl index f8457969d1cb0cd372519895e578e466af65e8d2..baf35ae2d40de7a11343ce5f6efb20ad38606f66 100644 --- a/workflows/LBA_calibrator.cwl +++ b/workflows/LBA_calibrator.cwl @@ -88,9 +88,6 @@ inputs: - id: tables2export type: string? default: phaseOrig - - id: final_apply - type: boolean? - default: false - id: max_dppp_threads type: int? default: 10 @@ -200,8 +197,6 @@ steps: source: clock_smooth - id: tables2export source: tables2export - - id: final_apply - source: final_apply - id: max_dppp_threads source: max_dppp_threads - id: memoryperc diff --git a/workflows/prefactor_calibrator.cwl b/workflows/prefactor_calibrator.cwl index 775ffbba654104075ada8f6058a6a85e35184fcd..637da95382a42e50bf15cd99e3c25f4d5f747e62 100644 --- a/workflows/prefactor_calibrator.cwl +++ b/workflows/prefactor_calibrator.cwl @@ -87,9 +87,6 @@ inputs: - id: tables2export type: string? default: clock - - id: final_apply - type: boolean? - default: false - id: max_dppp_threads type: int? default: 10 diff --git a/workflows/prefactor_calibrator/apply_calibrate_bp.cwl b/workflows/prefactor_calibrator/apply_calibrate_bp.cwl index 0553de826418377d45a635d26cad25f987c435bd..b68172344f6dcd8c25db998b236e1f9f1548c771 100644 --- a/workflows/prefactor_calibrator/apply_calibrate_bp.cwl +++ b/workflows/prefactor_calibrator/apply_calibrate_bp.cwl @@ -161,8 +161,9 @@ steps: source: BLsmooth/msout - id: msin_datacolumn default: SMOOTHED_DATA - - id: msin_modelcolum - default: MODEL_DATA + - id: modeldatacolumns + default: + - 'MODEL_DATA' - id: propagate_solutions source: propagatesolutions - id: flagunconverged diff --git a/workflows/prefactor_calibrator/apply_calibrate_fr.cwl b/workflows/prefactor_calibrator/apply_calibrate_fr.cwl index e137916377b63bbfab9b850ab76f0ae2e9ff2c91..d7bd66787989f2d464345f5dbf547d0c928a403b 100644 --- a/workflows/prefactor_calibrator/apply_calibrate_fr.cwl +++ b/workflows/prefactor_calibrator/apply_calibrate_fr.cwl @@ -78,8 +78,9 @@ steps: source: BLsmooth/msout - id: msin_datacolumn default: SMOOTHED_DATA - - id: msin_modelcolum - default: MODEL_DATA + - id: modeldatacolumns + default: + - 'MODEL_DATA' - id: flagunconverged source: flagunconverged - id: propagate_solutions diff --git a/workflows/prefactor_calibrator/apply_calibrate_pa.cwl b/workflows/prefactor_calibrator/apply_calibrate_pa.cwl index 781f954f17964b5fcadd97a0e9cb440f1df38332..dace8768a8f427a2ac1ef1254ade4d3b682417c1 100644 --- a/workflows/prefactor_calibrator/apply_calibrate_pa.cwl +++ b/workflows/prefactor_calibrator/apply_calibrate_pa.cwl @@ -109,8 +109,9 @@ steps: source: BLsmooth/msout - id: msin_datacolumn default: SMOOTHED_DATA - - id: msin_modelcolum - default: MODEL_DATA + - id: modeldatacolumns + default: + - 'MODEL_DATA' - id: flagunconverged source: flagunconverged - id: propagate_solutions diff --git a/workflows/prefactor_calibrator/predict_calibrate.cwl b/workflows/prefactor_calibrator/predict_calibrate.cwl index 3956350eae8400d8c096de335b6de2130ccb62ff..99d585f5c63ca9636773e9e2ecf3e0cb7dbe2423 100644 --- a/workflows/prefactor_calibrator/predict_calibrate.cwl +++ b/workflows/prefactor_calibrator/predict_calibrate.cwl @@ -79,8 +79,9 @@ steps: source: predict/msout - id: msin_datacolumn default: SMOOTHED_DATA - - id: msin_modelcolum - default: MODEL_DATA + - id: modeldatacolumns + default: + - 'MODEL_DATA' - id: propagate_solutions source: propagatesolutions - id: flagunconverged diff --git a/workflows/prefactor_target/concat.cwl b/workflows/prefactor_target/concat.cwl index 042327fec9e60eabcbcbd5c40415aa3d7c5974fc..d9e92babdf6add571c6900a37485b4e50265fa9d 100644 --- a/workflows/prefactor_target/concat.cwl +++ b/workflows/prefactor_target/concat.cwl @@ -18,9 +18,6 @@ inputs: - id: avg_freqresolution_concat type: string? default: '97.64kHz' - - id: min_unflagged_fraction - type: float? - default: 0.5 outputs: - id: flagged_fraction_dict outputSource: diff --git a/workflows/prefactor_target/finalize.cwl b/workflows/prefactor_target/finalize.cwl index 33486c9305dfc05699e698c439346f79b55ba84e..d62f9a1e4230f42c10fd79af4fa207738a5fc160 100644 --- a/workflows/prefactor_target/finalize.cwl +++ b/workflows/prefactor_target/finalize.cwl @@ -178,8 +178,6 @@ steps: valueFrom: $(self.nameroot+'_wsclean.ms') - id: msin_datacolumn default: DATA - - id: msout_datacolumn - default: DATA - id: overwrite default: false - id: storagemanager @@ -267,7 +265,7 @@ steps: default: 15asec - id: auto_threshold default: 5 - - id: size + - id: image_size default: [2500,2500] - id: niter default: 10000 diff --git a/workflows/prefactor_target/gsmcal.cwl b/workflows/prefactor_target/gsmcal.cwl index 0e769b6cd5de86be85f790a392e56e1e956c122c..affefcec616e8e7b2b60e77916009ea421f93431 100644 --- a/workflows/prefactor_target/gsmcal.cwl +++ b/workflows/prefactor_target/gsmcal.cwl @@ -311,8 +311,6 @@ steps: source: avg_timeresolution_concat - id: avg_freqresolution_concat source: avg_freqresolution_concat - - id: min_unflagged_fraction - source: min_unflagged_fraction out: - id: msout - id: flagged_fraction_dict