From ae66ad8122ad59b2d38f534375a7f0896122c2af Mon Sep 17 00:00:00 2001
From: Tammo Jan Dijkema <dijkema@astron.nl>
Date: Mon, 14 Oct 2019 16:17:00 +0200
Subject: [PATCH] Add test workflow
---
.gitlab-ci.yml | 3 +-
test_workflow/test.cwl | 64 ------------------------------------------
2 files changed, 2 insertions(+), 65 deletions(-)
delete mode 100644 test_workflow/test.cwl
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c42c3403..d3c0ac9c 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -21,7 +21,7 @@ before_script:
- source venv/bin/activate
- pip install cwltool cwl-runner
- cd test_data
- - tar -xvf ${TEST_DATASET_NAME}
+ - tar -xf ${TEST_DATASET_NAME}
- cd $CI_PROJECT_DIR
after_script:
@@ -39,3 +39,4 @@ test_DPPP_step:
- cwl-runner steps/DP3.AveragerStepGenerator.cwl test_jobs/averager_step_generator.json
- cwl-runner steps/DP3.AOFlaggerStepGenerator.cwl test_jobs/aoflagger_step_generator.json
- ! cwl-runner steps/DP3.AveragerStepGenerator.cwl test_jobs/averager_step_generator_error.json
+ - cwltool test_workflow/flag_average.cwl msin=test_data/L570745_SB001_uv_first10.MS
diff --git a/test_workflow/test.cwl b/test_workflow/test.cwl
deleted file mode 100644
index c03bf543..00000000
--- a/test_workflow/test.cwl
+++ /dev/null
@@ -1,64 +0,0 @@
-class: Workflow
-cwlVersion: v1.0
-id: test
-label: test
-$namespaces:
- sbg: 'https://www.sevenbridges.com'
-inputs:
- - id: msin
- type: Directory
- 'sbg:x': -1111
- 'sbg:y': -277
-outputs:
- - id: msout
- outputSource:
- - dppp/msout
- type: Directory
- 'sbg:x': -772.234375
- 'sbg:y': -472.50433349609375
-steps:
- - id: aoflagger_step_generator
- in: []
- out:
- - id: parameters_out
- run: ../steps/DP3.AOFlaggerStepGenerator.cwl
- 'sbg:x': -1357.640625
- 'sbg:y': -729.5
- - id: average_step_generator
- in:
- - id: input_parset
- source:
- - aoflagger_step_generator/parameters_out
- out:
- - id: parameters_out
- run: ../steps/DP3.AveragerStepGenerator.cwl
- 'sbg:x': -1125
- 'sbg:y': -729
- - id: generic_step
- in:
- - id: parameters_input
- source:
- - average_step_generator/parameters_out
- out:
- - id: output_parset
- - id: input_files
- - id: input_directories
- run: ../steps/DP3.ParsetGenerator.cwl
- 'sbg:x': -1174
- 'sbg:y': -525
- - id: dppp
- in:
- - id: parset
- source: generic_step/output_parset
- - id: msin
- source: msin
- - id: secondary_files
- source:
- - generic_step/input_files
- out:
- - id: msout
- run: ../steps/DPPP.cwl
- 'sbg:x': -957
- 'sbg:y': -530
-requirements:
- - class: SubworkflowFeatureRequirement
--
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