From a68a261ccd66b40ad185d6d215ce408df9d868cd Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Tue, 29 Oct 2019 10:14:30 +0100
Subject: [PATCH] Interpolate inplace
Former-commit-id: a5c95d1869a52aa13d462d6e6cc736e03e2b8e50
---
steps/interpolate_visibilities.cwl | 21 +++++++++++----------
1 file changed, 11 insertions(+), 10 deletions(-)
diff --git a/steps/interpolate_visibilities.cwl b/steps/interpolate_visibilities.cwl
index e4dc74d9..086cbaf9 100644
--- a/steps/interpolate_visibilities.cwl
+++ b/steps/interpolate_visibilities.cwl
@@ -3,24 +3,19 @@ cwlVersion: v1.0
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: interpolate_visibilities
+
baseCommand:
- DPPP
-arguments:
+arguments:
- msout.datacolumn=INTERP_DATA
- msin.datacolumn=DATA
- - steps=[interpolate]
+ - steps=[interpolate]
inputs:
- id: msin
type: Directory
inputBinding:
prefix: 'msin='
separate: false
- - id: msout_name
- default: out.MS
- type: string
- inputBinding:
- prefix: 'msout='
- separate: false
- id: storage_manager
type: string
default: Dysco
@@ -39,12 +34,18 @@ inputs:
prefix: 'interpolate.windowsize='
separate: false
-outputs:
+outputs:
- id: msout
type: Directory
outputBinding:
- glob: $(inputs.msout_name)
+ glob: $(inputs.msin)
label: interpolate_visibilities
hints:
- class: DockerRequirement
dockerPull: lofar/lofar-pipeline
+
+requirements:
+ - class: InitialWorkDirRequirement
+ listing:
+ - entry: $(inputs.msin)
+ writable: true
--
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