From 864ffb4ae3c8a3926043a76effea634b0ebb028d Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Wed, 15 Jan 2020 10:19:13 +0100
Subject: [PATCH] Add LoSoTo XY offset
Former-commit-id: 239ee7356ecc82a693c9426cf75785a3b434f5be
---
.gitlab-ci.yml | 7 ++++
steps/LoSoTo.PrefactorXYoffset.cwl | 53 +++++++++++++++++++++++++
test_jobs/losoto_prefactorxyoffset.json | 5 +++
3 files changed, 65 insertions(+)
create mode 100644 steps/LoSoTo.PrefactorXYoffset.cwl
create mode 100644 test_jobs/losoto_prefactorxyoffset.json
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 7c35c120..3a8d9d08 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -131,6 +131,13 @@ losoto_flagextend:
allow_failure: true
script:
- cwl-runner --no-container steps/LoSoTo.Flagextend.cwl test_jobs/losoto_flagextend.json
+
+losoto_prefactor_xyoffset:
+ stage: test_steps
+ allow_failure: true
+ script:
+ - cwl-runner --no-container steps/LoSoTo.PrefactorXYoffset.cwl test_jobs/losoto_prefactorxyoffset.json
+
losoto_flagstation:
stage: test_steps
allow_failure: true
diff --git a/steps/LoSoTo.PrefactorXYoffset.cwl b/steps/LoSoTo.PrefactorXYoffset.cwl
new file mode 100644
index 00000000..49e072c3
--- /dev/null
+++ b/steps/LoSoTo.PrefactorXYoffset.cwl
@@ -0,0 +1,53 @@
+#!/usr/bin/env cwl-runner
+
+class: CommandLineTool
+cwlVersion: v1.0
+id: losoto_prefactor_xyoffset
+
+$namespaces:
+ lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
+
+requirements:
+ InlineJavascriptRequirement:
+ expressionLib:
+ - { $include: utils.js}
+ InitialWorkDirRequirement:
+ listing:
+ - entryname: 'parset.config'
+ entry: $(get_losoto_config('PREFACTOR_XYOFFSET').join('\n'))
+
+ - entryname: $(inputs.input_h5parm.basename)
+ entry: $(inputs.input_h5parm)
+ writable: true
+
+baseCommand: "losoto"
+
+arguments:
+ - $(inputs.input_h5parm.basename)
+ - parset.config
+
+hints:
+ DockerRequirement:
+ dockerPull: lofareosc/lofar-pipeline-ci:latest
+
+inputs:
+ - id: input_h5parm
+ type: File
+ format: lofar:#H5Parm
+ - id: soltab
+ type: string
+ doc: "Solution table"
+ - id: chanWidth
+ type: string
+ doc: |
+ the width of each channel in the data from which solutions were obtained. Can be
+ either a string like "48kHz" or a float in Hz.
+
+outputs:
+ - id: output_h5parm
+ type: File
+ format: lofar:#H5Parm
+ outputBinding:
+ glob: $(inputs.input_h5parm.basename)
+$schema:
+ - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
diff --git a/test_jobs/losoto_prefactorxyoffset.json b/test_jobs/losoto_prefactorxyoffset.json
new file mode 100644
index 00000000..f98c786c
--- /dev/null
+++ b/test_jobs/losoto_prefactorxyoffset.json
@@ -0,0 +1,5 @@
+{
+ "input_h5parm": {"class": "File", "path": "/data/example.h5", "format": "lofar:#H5Parm"},
+ "soltab": "sol000/phase000",
+ "chanWidth" : "48kHz"
+}
--
GitLab