diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 553526156cfe3a105f5a910f28f96804332949a4..3eb19d1cde883c3b9f191f65dca84f644995ba6e 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -10,8 +10,7 @@ variables: stages: - download_data - validate_cwl_scripts - - test_calibrator - - test_target + - test_full before_script: - mkdir workdir @@ -38,19 +37,13 @@ validate_scripts: script: - for file in `find . -name 'steps/*.cwl'`; do cwltool --validate $file; done -run_hba_calibrator: - stage: test_calibrator +run_hba_full: + stage: test_full allow_failure: true needs: ["download_data"] script: - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json - - test_jobs/check_workflow_results.py results results_calibrator + - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_calibrator - rm -f results - -run_hba_target: - stage: test_target - allow_failure: true - needs: ["download_data"] - script: - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_target.cwl test_jobs/HBA_target.json - - test_jobs/check_workflow_results.py results results_target + - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_target