From 5eae0df9d2f6b85025809b246351ca4ef6ff22ba Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Fri, 19 Jun 2020 10:13:56 +0200
Subject: [PATCH] Add missing steps
Former-commit-id: 05f24f659e61eb3d22ec6c9eedd96df7ce78a819
Former-commit-id: 880726ebad94b0dbf4147218ac133961143bcb85
---
lofar-cwl/steps/DP3.Execute.cwl | 12 +++++
lofar-cwl/steps/DP3.FilterStepGenerator.cwl | 50 +++++++++++++++++++++
2 files changed, 62 insertions(+)
create mode 100644 lofar-cwl/steps/DP3.FilterStepGenerator.cwl
diff --git a/lofar-cwl/steps/DP3.Execute.cwl b/lofar-cwl/steps/DP3.Execute.cwl
index e1f3bbfd..a1802137 100644
--- a/lofar-cwl/steps/DP3.Execute.cwl
+++ b/lofar-cwl/steps/DP3.Execute.cwl
@@ -41,6 +41,18 @@ outputs:
type: Directory
'sbg:x': 224.60113525390625
'sbg:y': 130
+ - id: logfile
+ outputSource:
+ - dppp/logfile
+ type: 'File[]'
+ 'sbg:x': 185.1875
+ 'sbg:y': 334.5
+ - id: parset
+ outputSource:
+ - generic_step/parset
+ type: File
+ 'sbg:x': 11.1875
+ 'sbg:y': -299.5
steps:
- id: generic_step
in:
diff --git a/lofar-cwl/steps/DP3.FilterStepGenerator.cwl b/lofar-cwl/steps/DP3.FilterStepGenerator.cwl
new file mode 100644
index 00000000..0a582b27
--- /dev/null
+++ b/lofar-cwl/steps/DP3.FilterStepGenerator.cwl
@@ -0,0 +1,50 @@
+#!/usr/bin/env cwl-runner
+
+class: Workflow
+cwlVersion: v1.0
+$namespaces:
+ sbg: 'https://www.sevenbridges.com/'
+id: dp3-filter-step-generator
+
+inputs:
+ - id: steps
+ type: Any[]?
+ default: []
+ - id: step_name
+ type: string
+ doc: unique name for the step
+ default: filter
+ - id: baseline
+ type: string
+ doc: baseline to keeps
+ - id: remove
+ type: boolean
+ doc: Remove or flag
+outputs:
+- id: augmented_steps
+ outputSource:
+ - DP3_GenericStep/augmented_steps
+ type: Any[]
+
+steps:
+ - id: DP3_GenericStep
+ in:
+ - id: steps
+ source: steps
+ - id: parameters
+ valueFrom: $(inputs)
+ - id: step_id
+ source: step_name
+ - id: step_type
+ default: 'filter'
+ - id: baseline
+ source: baseline
+ - id: remove
+ source: remove
+ out:
+ - augmented_steps
+ run: ../steps/DP3.GenericStep.cwl
+requirements:
+ - class: StepInputExpressionRequirement
+ - class: InlineJavascriptRequirement
+ - class: MultipleInputFeatureRequirement
\ No newline at end of file
--
GitLab