diff --git a/steps/DP3.ParsetGenerator.cwl b/steps/DP3.ParsetGenerator.cwl index fdb5d66d470ff3257c9c770ded3d14531b3b16a7..c810ac8a343b59bd8b45f285b14051c7acb0e3c3 100644 --- a/steps/DP3.ParsetGenerator.cwl +++ b/steps/DP3.ParsetGenerator.cwl @@ -66,9 +66,9 @@ outputs: outputEval: |- ${ var outfiles = [] - for(let step in inputs.parameters_input){ + for(var step in inputs.parameters_input){ step = inputs.parameters_input[step] - for(let parameter in step['parameters']){ + for(var parameter in step['parameters']){ parameter = step['parameters'][parameter] if (parameter != null && parameter.class =='File'){ @@ -85,9 +85,9 @@ outputs: outputEval: | ${ var outdirs = [] - for(let step in inputs.parameters_input){ + for(var step in inputs.parameters_input){ step = inputs.parameters_input[step] - for(let parameter in step['parameters']){ + for(var parameter in step['parameters']){ parameter = step['parameters'][parameter] if (parameter != null && parameter.class=='Directory'){ outdirs.push(parameter) diff --git a/subworkflow/ndppp_prep_cal.cwl b/subworkflow/ndppp_prep_cal.cwl index 33a66f9ad7bdee6cfdcb120df81cd83a9c0d42f6..ebe32a2f869b79c3c054d7e39b577dc82d9eef37 100644 --- a/subworkflow/ndppp_prep_cal.cwl +++ b/subworkflow/ndppp_prep_cal.cwl @@ -29,6 +29,10 @@ inputs: type: boolean 'sbg:x': 1736.6195068359375 'sbg:y': -298.45196533203125 + - id: msin + type: Directory? + 'sbg:x': 2095.969482421875 + 'sbg:y': 563.7855224609375 outputs: - id: msout outputSource: @@ -36,12 +40,12 @@ outputs: type: Directory 'sbg:x': 2856.537841796875 'sbg:y': 53.67763900756836 - - id: output + - id: demix_parmdb outputSource: - filter_demix_parmdb/output type: Directory - 'sbg:x': 3000.845703125 - 'sbg:y': -213.68421936035156 + 'sbg:x': 3071.909912109375 + 'sbg:y': -170.69992065429688 steps: - id: flagbaseline in: @@ -170,6 +174,8 @@ steps: in: - id: parset source: parsetgenerator/output_parset + - id: msin + source: msin - id: secondary_files source: - parsetgenerator/input_files @@ -198,7 +204,6 @@ steps: out: - id: output run: ../steps/DirSelector.cwl - label: FileDirSelector 'sbg:x': 2838.8115234375 'sbg:y': -151.54710388183594 requirements: