From 43cde1f154fe68bb1589e14224288bec4f78396e Mon Sep 17 00:00:00 2001
From: David Rafferty <drafferty@hs.uni-hamburg.de>
Date: Mon, 5 Jul 2021 14:50:53 +0200
Subject: [PATCH] Add check to exclude empty strings
Former-commit-id: 99bbb2425f0b8f89abad060dd6478155e9e5cdc0
---
steps/identify_bad_antennas_join.cwl | 21 +++++++++++----------
1 file changed, 11 insertions(+), 10 deletions(-)
diff --git a/steps/identify_bad_antennas_join.cwl b/steps/identify_bad_antennas_join.cwl
index 03a3c2e5..8d2abd59 100644
--- a/steps/identify_bad_antennas_join.cwl
+++ b/steps/identify_bad_antennas_join.cwl
@@ -14,30 +14,31 @@ inputs:
type: string?
default: '*&'
doc: Filter these baselines for the comparison
-
+
label: identifyBadAntennas_join
arguments:
- '-c'
- |
-
+
import sys
import json
-
+
flaggedants = $(inputs.flaggedants)
filter = '$(inputs.filter)'
-
+
flaggedants_list = [ flaggedant.split(',') for flaggedant in flaggedants ]
- flagged_antenna_list = set.intersection(*map(set, flaggedants_list))
+ flagged_antenna_list = set.intersection(*map(set, flaggedants_list))
for flagged_antenna in flagged_antenna_list:
- filter += ';!' + flagged_antenna + '*&&*'
+ if flagged_antenna != '':
+ filter += ';!' + flagged_antenna + '*&&*'
cwl_output = {"filter": filter}
with open('./out.json', 'w') as fp:
json.dump(cwl_output, fp)
-
+
outputs:
- id: filter_out
type: string
@@ -48,10 +49,10 @@ outputs:
- id: logfile
type: File?
outputBinding:
- glob: identifyBadAntennas.log
-
+ glob: identifyBadAntennas.log
+
requirements:
- class: InlineJavascriptRequirement
stdout: identifyBadAntennas.log
-stderr: identifyBadAntennas_err.log
\ No newline at end of file
+stderr: identifyBadAntennas_err.log
--
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