From 2df419e40394fa55c0b24590076ded19feb7bcea Mon Sep 17 00:00:00 2001
From: mancini <mancini@astron.nl>
Date: Mon, 9 Dec 2019 16:03:57 +0100
Subject: [PATCH] Remove unnecessary files
Former-commit-id: b0e05d6f474507fc52706ee512fbab3cc78ca399 [formerly b081f26e90c41f5088cf44ca2de5e2d6ae83e7c3]
Former-commit-id: 994d29a384d680118c2c95b146a3f777cd395814
Former-commit-id: 6878f59fcace8d8e463ce6c3537f12b7df68b90b
---
steps/RadioDatatypes.yaml | 8 -----
steps/find_skymodel_cal.cwl | 59 -------------------------------------
2 files changed, 67 deletions(-)
delete mode 100644 steps/RadioDatatypes.yaml
delete mode 100644 steps/find_skymodel_cal.cwl
diff --git a/steps/RadioDatatypes.yaml b/steps/RadioDatatypes.yaml
deleted file mode 100644
index 0a167954..00000000
--- a/steps/RadioDatatypes.yaml
+++ /dev/null
@@ -1,8 +0,0 @@
-type: array
-name: MeasurementSet
-label: The measurement set data location
-items:
- - name: main_directory
- type: Directory
- inputBinding:
- position: 0
diff --git a/steps/find_skymodel_cal.cwl b/steps/find_skymodel_cal.cwl
deleted file mode 100644
index 51a1dc4a..00000000
--- a/steps/find_skymodel_cal.cwl
+++ /dev/null
@@ -1,59 +0,0 @@
-class: CommandLineTool
-cwlVersion: v1.0
-$namespaces:
- sbg: 'https://www.sevenbridges.com/'
-id: find_skymodel_cal_py
-baseCommand:
- - python3
-inputs:
- - id: msin
- type: Directory
- doc: MS containing the calibrator
- inputBinding:
- position: 0
- - id: skymodels
- type: Directory
- doc: Directory containing the sky models
- - id: skymodels_extension
- type: string?
- doc: path extension of the sky models
-
-label: find_skymodel_cal.py
-arguments:
- - '-c'
- - |
- import sys
-
- from unittest.mock import MagicMock
- sys.modules['lofarpipe.support.data_map'] = MagicMock()
-
-
- from find_skymodel_cal import main as find_skymodel
- import json
- mss = sys.argv[1:]
- skymodels = "$(inputs.skymodels.path)"
-
- extension = "$(inputs.skymodels_extension)"
- output = {}
- if extension != 'null':
- output = find_skymodel(mss, skymodels, './', extension)
- else:
- output = find_skymodel(mss, skymodels, './')
-
- cwl_output = {'class': 'File', 'path': output['SkymodelCal']}
- with open('./out.json', 'w') as fp:
- json.dump(cwl_output, fp)
-outputs:
- - id: output_models
- type: File
- outputBinding:
- loadContents: true
- glob: 'out.json'
- outputEval: $(JSON.parse(self[0].contents))
-
-requirements:
- - class: InlineJavascriptRequirement
-
-hints:
- DockerRequirement:
- dockerPull: lofareosc/prefactor-ci:master
--
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