diff --git a/steps/applycal.cwl b/steps/applycal.cwl index 4c51279bb877ec37f56cdacfdc1f0ced8e950692..748029f85ade072e5bed2419133931070a17c6a6 100644 --- a/steps/applycal.cwl +++ b/steps/applycal.cwl @@ -5,9 +5,6 @@ $namespaces: id: applycal baseCommand: - DPPP -arguments: - - steps=[applycal] - - msout=. inputs: - id: msin type: Directory @@ -26,37 +23,51 @@ inputs: doc: Input data Column - id: parmdb type: File - doc: Path of parmdb in which the parameters are stored. This can also be an H5Parm file, in that case the filename has to end in '.h5' inputBinding: + position: 0 prefix: applycal.parmdb= separate: false + doc: >- + Path of parmdb in which the parameters are stored. This can also be an + H5Parm file, in that case the filename has to end in '.h5' - id: msout_datacolumn type: string - doc: Output data column inputBinding: + position: 0 prefix: msout.datacolumn= separate: false - - id: correction - default: gain + doc: Output data column + - default: gain + id: correction type: string - doc: | - Type of correction to perform. When using H5Parm, this is for now the name of the soltab; the type will be deduced from the metadata in that soltab, except for full Jones, in which case correction should be 'fulljones'. inputBinding: - prefix: applycal.correction= - + position: 0 + prefix: applycal.correction= + separate: false + doc: > + Type of correction to perform. When using H5Parm, this is for now the name + of the soltab; the type will be deduced from the metadata in that soltab, + except for full Jones, in which case correction should be 'fulljones'. + - id: updateweights + type: boolean? + inputBinding: + position: 0 + prefix: applycal.updateweights=True outputs: - id: msout doc: Output Measurement Set type: Directory outputBinding: - glob: $(inputs.msin.basename) - + glob: $(inputs.msin.basename) +arguments: + - 'steps=[applycal]' + - msout=. requirements: - class: InitialWorkDirRequirement listing: - - entry: $(inputs.msin) - writable: true + - entry: $(inputs.msin) + writable: true - class: InlineJavascriptRequirement hints: - class: DockerRequirement - dockerPull: lofareosc/lofar-pipeline-ci:latest + dockerPull: 'lofareosc/lofar-pipeline-ci:latest'