From 24870ffd0f82a0f0798f6ef0ebf96e6d39f69013 Mon Sep 17 00:00:00 2001
From: Matthijs van der Wild <matthijs.van-der-wild@durham.ac.uk>
Date: Fri, 8 Sep 2023 14:12:47 +0000
Subject: [PATCH] Parset files are now collected from stdout.
---
steps/dp3_make_parset_cal.cwl | 21 ++++++++-------------
steps/dp3_make_parset_target.cwl | 21 ++++++++-------------
2 files changed, 16 insertions(+), 26 deletions(-)
diff --git a/steps/dp3_make_parset_cal.cwl b/steps/dp3_make_parset_cal.cwl
index 4b5ad37c..3dc3c831 100755
--- a/steps/dp3_make_parset_cal.cwl
+++ b/steps/dp3_make_parset_cal.cwl
@@ -56,22 +56,17 @@ inputs:
- id: lbfgs_robustdof
type: float?
default: 200
+
outputs:
- id: output
- type: File
- outputBinding:
- glob: DP3.parset
+ type: stdout
+
baseCommand:
- - cp
-arguments:
- - prefix: ''
- shellQuote: false
- position: 0
- valueFrom: input.parset
- - prefix: ''
- shellQuote: false
- position: 0
- valueFrom: DP3.parset
+ - cat
+ - input.parset
+
+stdout: DP3.parset
+
requirements:
- class: InlineJavascriptRequirement
- class: ShellCommandRequirement
diff --git a/steps/dp3_make_parset_target.cwl b/steps/dp3_make_parset_target.cwl
index 6804568e..c9ebf229 100755
--- a/steps/dp3_make_parset_target.cwl
+++ b/steps/dp3_make_parset_target.cwl
@@ -76,22 +76,17 @@ inputs:
- id: lbfgs_robustdof
type: float?
default: 200
+
outputs:
- id: output
- type: File
- outputBinding:
- glob: DP3.parset
+ type: stdout
+
baseCommand:
- - cp
-arguments:
- - prefix: ''
- shellQuote: false
- position: 0
- valueFrom: input.parset
- - prefix: ''
- shellQuote: false
- position: 0
- valueFrom: DP3.parset
+ - cat
+ - input.parset
+
+stdout: DP3.parset
+
requirements:
- class: InlineJavascriptRequirement
- class: ShellCommandRequirement
--
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