diff --git a/steps/DP3.Execute.cwl b/steps/DP3.Execute.cwl new file mode 100644 index 0000000000000000000000000000000000000000..22e80de4b0570e84d3a73a155a6556dcb67e0086 --- /dev/null +++ b/steps/DP3.Execute.cwl @@ -0,0 +1,79 @@ +class: Workflow +cwlVersion: v1.0 +id: dp3_execute +label: DP3.Execute +$namespaces: + sbg: 'https://www.sevenbridges.com/' +inputs: + - id: msout_name + type: string + 'sbg:x': -425.39886474609375 + 'sbg:y': 127 + - id: msin + type: Directory? + 'sbg:x': -254.39886474609375 + 'sbg:y': 242 + - id: steps + type: 'Any[]?' + 'sbg:x': -518.3988647460938 + 'sbg:y': -88 +outputs: + - id: secondary_output_files + outputSource: + - dppp/secondary_output_files + type: Any + 'sbg:x': 213.60113525390625 + 'sbg:y': -184 + - id: secondary_output_directories + outputSource: + - dppp/secondary_output_directories + type: Any + 'sbg:x': 248.60113525390625 + 'sbg:y': -47 + - id: msout + outputSource: + - dppp/msout + type: Directory + 'sbg:x': 224.60113525390625 + 'sbg:y': 130 +steps: + - id: generic_step + in: + - id: steps + source: + - steps + out: + - id: parset + - id: input_files + - id: input_directories + - id: output_file_names + - id: output_directory_names + run: ./DP3.ParsetGenerator.cwl + 'sbg:x': -294 + 'sbg:y': -84 + - id: dppp + in: + - id: parset + source: generic_step/parset + - id: msin + source: msin + - id: msout_name + source: msout_name + - id: secondary_files + source: + - generic_step/input_files + - id: secondary_directories + source: + - generic_step/input_directories + - id: output_file_names + source: generic_step/output_file_names + - id: output_directory_names + source: generic_step/output_directory_names + out: + - id: msout + - id: secondary_output_files + - id: secondary_output_directories + run: ./DPPP.cwl + 'sbg:x': 26 + 'sbg:y': -46 +requirements: []